Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00037 ATGGCGGTTCTACCAACCAACTCTTCAAGATTGGATCTCACCATCTCTGTACCTGGCTTCACTTCATTCTCATCATCACCACTTCCTCCATCTGCGGTGCGAGATTTGGACATGAATAGAGCGCCGGATGAAGAGGAGTGGATGATGGGAAGCATGGAGGAAGATGAAGAAAACAACAGTGGAAGCCATCCAAGGAAGAAGCTGCGTTTAACAAAGGAACAGTCTCATCTTCTTGAACAAAGCTTCAGACAAAACCATACCTTAAACCCAAAACAAAAGGAGACTCTTGCGGAAGTGCTGAAGCTGAAGCCAAGGCAGGTTGAGGTTTGGTTTCAGAACCGAAGGGCCAGGAGCAAGCTGAAGCAGACCGAGATGGAGTGCGAGTATCTGAAGAGATGGTTCGGCCTATTGACGGAGCAAAACAAGAAACTGCAGAAGGAGGTGGAGGAGCTGAGGGCGATGAAGGTGGCGCCGCCGACGGTGATTTCACCACACAGCTGCGAGCCGCTGCCGGCGTCGAACCTCACAATGTGTCCACGCTGCGAGCGCGTGACCACTACCACCCTCGACAAGACCCGCATTGTCGTTTAA 591 51.61 MAVLPTNSSRLDLTISVPGFTSFSSSPLPPSAVRDLDMNRAPDEEEWMMGSMEEDEENNSGSHPRKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKKLQKEVEELRAMKVAPPTVISPHSCEPLPASNLTMCPRCERVTTTTLDKTRIVV 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 232439 234412 - CmoCh04G000370.1 Cmo04g00037 379012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00037 196 Pfam Homeobox associated leucine zipper 121 155 IPR003106 GO:0006355|GO:0043565
Cmo04g00037 196 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Cmo04g00037 196 PANTHER - 1 191 - -
Cmo04g00037 196 SMART halz 121 164 IPR003106 GO:0006355|GO:0043565
Cmo04g00037 196 Pfam Homeodomain 65 119 IPR001356 GO:0003677
Cmo04g00037 196 SMART HOX_1 63 125 IPR001356 GO:0003677
Cmo04g00037 196 Gene3D - 57 127 - -
Cmo04g00037 196 SUPERFAMILY Homeodomain-like 51 122 IPR009057 -
Cmo04g00037 196 CDD homeodomain 64 122 IPR001356 GO:0003677
Cmo04g00037 196 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Cmo04g00037 196 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 1 191 - -
Cmo04g00037 196 Coils Coil 134 157 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00037 Cmo-Chr4:232439 Cmo03g00920 Cmo-Chr3:7019514 1.97E-50 dispersed
Cmo04g00037 Cmo-Chr4:232439 Cmo06g00102 Cmo-Chr6:586773 7.22E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9497 PF00046 Homeodomain 1.10E-16 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00037 K09338 - csv:101222713 346.665