Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00039 ATGGAGTCATCGATCACGGATCCTTCTCTTCATTCCTTTCTGCGATTCTCTTCTTCTTCTTCTTCTGGGGAACCCGGCGCCATGAGTAAGGGGAGGAATAATCTCCATCACTCACACGCCTCTGTGGACCCTCACAAGAAGATGGTTGACAAGGAATTTTTCACCGAATATGGTGAAGCTACTCAGTATGAAATTGAAGAAGTTATAGGCAAAGGGAGCTATGGGGTTGTTGCATCTGCCATAGACACTCACTCTGGCGAGAAAGTTGCCATCAAGAAGATAAATAATGTCTTCGAGCACGTTTCGGATGCTACACGGATTCTTAGAGAAATTAAGCTCCTCCGTTTTCTCCGGCATCCTGATATTGTTGACATAAAACATATAATACTCCCTCCTTCCAGAAGGGAGTTCAAAGATTTGTACATTGTTTTTGAGTTGATGGAGTCTGACCTTCATCATGTACTCAAAGCTAATGATGATCTCACCCCTCAACATCATCAATTTTTCTTGTATCAACTTCTTAGAGCCTTGAAGTATATACATTCAGCACATGTGTTCCATAGAGATTTGAAGCCAAAGAATATACTTGCCAATGCAGACTGCAAACTGAAGATCTGTGACTTTGGGCTTGCTCGTGCATCTTTTACTGATGCCCCATCTGCTATTTTTTGGACTGATTATGTGGCTACTCGATGGTACCGTGCTCCTGAACTCTGTGGCTCCTTTTTCTCAAAGTATACACCAGCTATTGATATTTGGAGCATAGGATGTATATTCGCTGAAATGTTGGCAGGCAAGCCATTGTTTCCTGGGAATAGTGTTGTGCATGAGCTGGATCTAATAACTGATTTACTTGGTACTCCTTCGGCTGAATGCATTGCTAAGATTCGTAATGAAAAGGCTAAAAGATACTTGAATAGCATGAAAAAAAAGCACCCTATTCCTCTGTCAAGAAAGTTCCCTAATGCAGATCCACTAGCTCTTCATTTACTTGAGCGTCTGCTTGCATTTGATCCTGAGGATCGTCCTTCTGCTGAGGAGGCATTAGCTGATCCATATTTCCATGGGCTTGCAAATGTGGAGGATGAACCATCGAGGCAACCCATTTCAAAACTTGAGTTTGAGTTTGAAAGGAGAAAGTTAACCAAAAATGATGTCAGAGAGCTTATTTATAGAGAAATTTTAGAGTATCATCCTCAAATGCTACAGGAATACCTTCAAGGTTCTGAGAGTCACTTCTTGTATCCCAGTGGAATTGATCAATTCAAGCGTCAATTTGATCATCTGGAGGAACACTCTGGTAAAGGTGAGAGAGGCAGTCCGCTCCTGAGGAAGTATGTCTCCTTGCCTAGGGAGCGAATCTGTACACCAAGAGATGAAGATGATGATAATTGTAAAACAGAACAGAATGCAACTTCAGCTGAACCTGCAGCGCATCAAAGCACTCCTGGACCTGGTTATTCATTAACTGCTCTGAATGGTTCTGTTCAAGTAGACTGCAGCAATTACAACCTGTTGAGGAGTGCAAGTATTAGTTGCTCAAAATGGGTGGATTAA 1557 42.07 MESSITDPSLHSFLRFSSSSSSGEPGAMSKGRNNLHHSHASVDPHKKMVDKEFFTEYGEATQYEIEEVIGKGSYGVVASAIDTHSGEKVAIKKINNVFEHVSDATRILREIKLLRFLRHPDIVDIKHIILPPSRREFKDLYIVFELMESDLHHVLKANDDLTPQHHQFFLYQLLRALKYIHSAHVFHRDLKPKNILANADCKLKICDFGLARASFTDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLAGKPLFPGNSVVHELDLITDLLGTPSAECIAKIRNEKAKRYLNSMKKKHPIPLSRKFPNADPLALHLLERLLAFDPEDRPSAEEALADPYFHGLANVEDEPSRQPISKLEFEFERRKLTKNDVRELIYREILEYHPQMLQEYLQGSESHFLYPSGIDQFKRQFDHLEEHSGKGERGSPLLRKYVSLPRERICTPRDEDDDNCKTEQNATSAEPAAHQSTPGPGYSLTALNGSVQVDCSNYNLLRSASISCSKWVD 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 237448 240951 + CmoCh04G000390.1 Cmo04g00039 379014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00039 518 ProSiteProfiles Protein kinase domain profile. 63 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00039 518 MobiDBLite consensus disorder prediction 16 43 - -
Cmo04g00039 518 SUPERFAMILY Protein kinase-like (PK-like) 60 360 IPR011009 -
Cmo04g00039 518 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 35 477 - -
Cmo04g00039 518 Gene3D Transferase(Phosphotransferase) domain 1 149 377 - -
Cmo04g00039 518 SMART serkin_6 63 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00039 518 Gene3D Phosphorylase Kinase; domain 1 79 400 - -
Cmo04g00039 518 CDD STKc_TDY_MAPK 62 399 - -
Cmo04g00039 518 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 35 477 - -
Cmo04g00039 518 ProSitePatterns Protein kinases ATP-binding region signature. 69 93 IPR017441 GO:0005524
Cmo04g00039 518 ProSitePatterns MAP kinase signature. 98 201 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cmo04g00039 518 Pfam Protein kinase domain 63 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00039 518 MobiDBLite consensus disorder prediction 457 486 - -
Cmo04g00039 518 MobiDBLite consensus disorder prediction 469 486 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00039 Cmo-Chr4:237448 Cmo11g00311 Cmo-Chr11:1499676 0 dispersed
Cmo04g00039 Cmo-Chr4:237448 Cmo04g01071 Cmo-Chr4:5368638 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74222 PF00069 Pkinase 9.00E-68 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00039 - - csv:101204645 822.772