Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g00039 | ATGGAGTCATCGATCACGGATCCTTCTCTTCATTCCTTTCTGCGATTCTCTTCTTCTTCTTCTTCTGGGGAACCCGGCGCCATGAGTAAGGGGAGGAATAATCTCCATCACTCACACGCCTCTGTGGACCCTCACAAGAAGATGGTTGACAAGGAATTTTTCACCGAATATGGTGAAGCTACTCAGTATGAAATTGAAGAAGTTATAGGCAAAGGGAGCTATGGGGTTGTTGCATCTGCCATAGACACTCACTCTGGCGAGAAAGTTGCCATCAAGAAGATAAATAATGTCTTCGAGCACGTTTCGGATGCTACACGGATTCTTAGAGAAATTAAGCTCCTCCGTTTTCTCCGGCATCCTGATATTGTTGACATAAAACATATAATACTCCCTCCTTCCAGAAGGGAGTTCAAAGATTTGTACATTGTTTTTGAGTTGATGGAGTCTGACCTTCATCATGTACTCAAAGCTAATGATGATCTCACCCCTCAACATCATCAATTTTTCTTGTATCAACTTCTTAGAGCCTTGAAGTATATACATTCAGCACATGTGTTCCATAGAGATTTGAAGCCAAAGAATATACTTGCCAATGCAGACTGCAAACTGAAGATCTGTGACTTTGGGCTTGCTCGTGCATCTTTTACTGATGCCCCATCTGCTATTTTTTGGACTGATTATGTGGCTACTCGATGGTACCGTGCTCCTGAACTCTGTGGCTCCTTTTTCTCAAAGTATACACCAGCTATTGATATTTGGAGCATAGGATGTATATTCGCTGAAATGTTGGCAGGCAAGCCATTGTTTCCTGGGAATAGTGTTGTGCATGAGCTGGATCTAATAACTGATTTACTTGGTACTCCTTCGGCTGAATGCATTGCTAAGATTCGTAATGAAAAGGCTAAAAGATACTTGAATAGCATGAAAAAAAAGCACCCTATTCCTCTGTCAAGAAAGTTCCCTAATGCAGATCCACTAGCTCTTCATTTACTTGAGCGTCTGCTTGCATTTGATCCTGAGGATCGTCCTTCTGCTGAGGAGGCATTAGCTGATCCATATTTCCATGGGCTTGCAAATGTGGAGGATGAACCATCGAGGCAACCCATTTCAAAACTTGAGTTTGAGTTTGAAAGGAGAAAGTTAACCAAAAATGATGTCAGAGAGCTTATTTATAGAGAAATTTTAGAGTATCATCCTCAAATGCTACAGGAATACCTTCAAGGTTCTGAGAGTCACTTCTTGTATCCCAGTGGAATTGATCAATTCAAGCGTCAATTTGATCATCTGGAGGAACACTCTGGTAAAGGTGAGAGAGGCAGTCCGCTCCTGAGGAAGTATGTCTCCTTGCCTAGGGAGCGAATCTGTACACCAAGAGATGAAGATGATGATAATTGTAAAACAGAACAGAATGCAACTTCAGCTGAACCTGCAGCGCATCAAAGCACTCCTGGACCTGGTTATTCATTAACTGCTCTGAATGGTTCTGTTCAAGTAGACTGCAGCAATTACAACCTGTTGAGGAGTGCAAGTATTAGTTGCTCAAAATGGGTGGATTAA | 1557 | 42.07 | MESSITDPSLHSFLRFSSSSSSGEPGAMSKGRNNLHHSHASVDPHKKMVDKEFFTEYGEATQYEIEEVIGKGSYGVVASAIDTHSGEKVAIKKINNVFEHVSDATRILREIKLLRFLRHPDIVDIKHIILPPSRREFKDLYIVFELMESDLHHVLKANDDLTPQHHQFFLYQLLRALKYIHSAHVFHRDLKPKNILANADCKLKICDFGLARASFTDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLAGKPLFPGNSVVHELDLITDLLGTPSAECIAKIRNEKAKRYLNSMKKKHPIPLSRKFPNADPLALHLLERLLAFDPEDRPSAEEALADPYFHGLANVEDEPSRQPISKLEFEFERRKLTKNDVRELIYREILEYHPQMLQEYLQGSESHFLYPSGIDQFKRQFDHLEEHSGKGERGSPLLRKYVSLPRERICTPRDEDDDNCKTEQNATSAEPAAHQSTPGPGYSLTALNGSVQVDCSNYNLLRSASISCSKWVD | 518 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 237448 | 240951 | + | CmoCh04G000390.1 | Cmo04g00039 | 379014 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g00039 | 518 | ProSiteProfiles | Protein kinase domain profile. | 63 | 354 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo04g00039 | 518 | MobiDBLite | consensus disorder prediction | 16 | 43 | - | - | |
Cmo04g00039 | 518 | SUPERFAMILY | Protein kinase-like (PK-like) | 60 | 360 | IPR011009 | - | |
Cmo04g00039 | 518 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 35 | 477 | - | - | |
Cmo04g00039 | 518 | Gene3D | Transferase(Phosphotransferase) domain 1 | 149 | 377 | - | - | |
Cmo04g00039 | 518 | SMART | serkin_6 | 63 | 354 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo04g00039 | 518 | Gene3D | Phosphorylase Kinase; domain 1 | 79 | 400 | - | - | |
Cmo04g00039 | 518 | CDD | STKc_TDY_MAPK | 62 | 399 | - | - | |
Cmo04g00039 | 518 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 35 | 477 | - | - | |
Cmo04g00039 | 518 | ProSitePatterns | Protein kinases ATP-binding region signature. | 69 | 93 | IPR017441 | GO:0005524 | |
Cmo04g00039 | 518 | ProSitePatterns | MAP kinase signature. | 98 | 201 | IPR003527 | GO:0004707|GO:0005524|GO:0006468 | |
Cmo04g00039 | 518 | Pfam | Protein kinase domain | 63 | 354 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo04g00039 | 518 | MobiDBLite | consensus disorder prediction | 457 | 486 | - | - | |
Cmo04g00039 | 518 | MobiDBLite | consensus disorder prediction | 469 | 486 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g00039 | Cmo-Chr4:237448 | Cmo11g00311 | Cmo-Chr11:1499676 | 0 | dispersed | |
Cmo04g00039 | Cmo-Chr4:237448 | Cmo04g01071 | Cmo-Chr4:5368638 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74222 | PF00069 | Pkinase | 9.00E-68 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g00039 | - | - | csv:101204645 | 822.772 |