Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00047 ATGGCCGGATTTGTGGCCAGCGACAGCGACAGTCCACCAGATGTGGCTCTACTGGACTTTGTTCGAGATGTTGTTCGAATGTCGGCGGGGACGAACAGTCTAAAGGTTTTCAAAAAGGATTGCACCGATCTCGTGCGTCGGATCGTGCTTTTGACGCATTTGTTTCAGGAAATCAGAGACTTTAATGGCGTCCAATTTCGACCTGTTCATACATCTTGCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGGGAGTGATTCATCTCCGAGTCCGTGGCTGTGTGATTTGGTGGCGGCATTGAAGGATACTAAACGCCTTGTTTTCATCGCTTCGACTTTCCGGTCCTGCAGTTCTTCTTCTGAGGAAGTTACCAGGAAGATACTCTTCCAATTCCAATGTGTGACGCTGAAGTTAGAGAATGCTTTGGGAAATCTTCCTTATGATCGCTTTGATATATCAGAGGAAGTTCAAGAACAGGTTGAATTAGTGAGAGCTCAGATGAGAAGAGCAGCAGAAAAATATGGCTCTCTGACCGCAATTCCTCCTTCAGTTGTTCAATCTCAGTTGCTAAAGAAAAACATGGATATGTTGAATCTGAACAACTGGGCTGATAACTTTGATGTTGAGGAGAATGGTGTTGTTGATCATGAGATTACAGTGAAATTTGATGAATTTCCAAATTGCAGAGGCTTCATGAATAATGGTGTGGATCAGCTGATTTTCGAAGGACTTGAGAAGAAACTTCCATCCTCCTCAGAGGCTTGTTCTGATGGACAGGATGCTTCTACCAAAAAGAGTGGAGATCAGGTGAAGAACTCAGATGGAGTTTCAATACCTGATGATTTTTTATGCCCCATTTCCCTGGAAATAATGAGGGATCCTGTTATTGTGTCCACAGGACAGACCTATGAGAGATCTTATGTGCAAAGGTGGATAGATTGTGGGAATACTACTTGCCCCAAAACTCAGCAGAAACTCCAAAACTTGACTCTCACCCCAAATTATGTACTGCGAAGTCTTATTACTCAGTGGTGTGTTGATCACAATATTGAGCAACCGACAGGATTAACCAATGGAAAGATCAAAAAGTGTGATGGATCATACCGTGATGTGTGTGAGGAGATGGCAGCCATTGAAACTCTGGTGCGCAAGCTAACTAGCCATTCGATTGCGGAGCAGAGAGCTTCTGTGACTGAAATTCGATCTCTATCAAAAAGAAGCACGGATAATAGAATTCTGATAGCTGAAGCAGGAGCAATACCAAATTTGGTCAATTTGTTAACTGCTGCTGATGTTTTAATACAAGAGAATGCAGTTACTTCCATTCTCAACCTTTCAATATATGAGAACAATAAGGGACTGATTATGCTTGCTGGTGCAGTACCTTCCATTGTCCAAGTTCTGAGAGTTGGGAGCATGGAAGCGAGAGAAAATGCAGCAGCTACACTTTTCAGCTTGTCTCTTGCTGATGAAAATAGGATAATCATTGGTGCTTCTGGGGCCACTCCGGCTCTTGTGGATTTACTTGAAACTGGAAGCCCAAGAGGGAAAAAGGATGCTGCAACCGCACTATTTAATTTGTGTATCTATCAGGGGAATAAGGGAAGGGCTGTGAGGGCAGGGATCATCCCAGCTCTATTAAGGATGCTCAACGTCTCAGGTAACTCCATGGTCGACGAAGCTCTCACAATAATGTCGGTCCTGGCCAGCCATCAAGAAGCAAAAGTAGCCATGGTGAAAGCCAGTACCATACCTGTTCTAATAGATCTGCTGAGGACCGGATTGGCTCGCAACAAAGAAAATGCTGCTGCTATTTTGCTTGCTCTATGTAAACGAGATACCGACAACCTTTCTTGCATAAGTAGGCTTGGGGCTAAGATTCCGCTGACTGAGCTCTCCAAGAGCGGCACAGAGAGAGCAAAAAGGAAGGCTACCTCACTGTTGGAACATCTTGGAAAACTACAGCAGCTATAG 1986 44.01 MAGFVASDSDSPPDVALLDFVRDVVRMSAGTNSLKVFKKDCTDLVRRIVLLTHLFQEIRDFNGVQFRPVHTSCSSSSSSSSSSSSSSGSDSSPSPWLCDLVAALKDTKRLVFIASTFRSCSSSSEEVTRKILFQFQCVTLKLENALGNLPYDRFDISEEVQEQVELVRAQMRRAAEKYGSLTAIPPSVVQSQLLKKNMDMLNLNNWADNFDVEENGVVDHEITVKFDEFPNCRGFMNNGVDQLIFEGLEKKLPSSSEACSDGQDASTKKSGDQVKNSDGVSIPDDFLCPISLEIMRDPVIVSTGQTYERSYVQRWIDCGNTTCPKTQQKLQNLTLTPNYVLRSLITQWCVDHNIEQPTGLTNGKIKKCDGSYRDVCEEMAAIETLVRKLTSHSIAEQRASVTEIRSLSKRSTDNRILIAEAGAIPNLVNLLTAADVLIQENAVTSILNLSIYENNKGLIMLAGAVPSIVQVLRVGSMEARENAAATLFSLSLADENRIIIGASGATPALVDLLETGSPRGKKDAATALFNLCIYQGNKGRAVRAGIIPALLRMLNVSGNSMVDEALTIMSVLASHQEAKVAMVKASTIPVLIDLLRTGLARNKENAAAILLALCKRDTDNLSCISRLGAKIPLTELSKSGTERAKRKATSLLEHLGKLQQL 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 273414 276825 + CmoCh04G000470.1 Cmo04g00047 379022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00047 661 Pfam Armadillo/beta-catenin-like repeat 412 450 IPR000225 GO:0005515
Cmo04g00047 661 Pfam Armadillo/beta-catenin-like repeat 494 532 IPR000225 GO:0005515
Cmo04g00047 661 SUPERFAMILY ARM repeat 372 655 IPR016024 -
Cmo04g00047 661 CDD RING-Ubox_PUB 286 328 IPR045210 -
Cmo04g00047 661 Gene3D - 560 660 IPR011989 -
Cmo04g00047 661 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 422 464 IPR000225 GO:0005515
Cmo04g00047 661 MobiDBLite consensus disorder prediction 255 277 - -
Cmo04g00047 661 SUPERFAMILY RING/U-box 276 356 - -
Cmo04g00047 661 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 20 658 - -
Cmo04g00047 661 ProSiteProfiles U-box domain profile. 281 355 IPR003613 GO:0004842|GO:0016567
Cmo04g00047 661 SMART arm_5 575 615 IPR000225 GO:0005515
Cmo04g00047 661 SMART arm_5 411 451 IPR000225 GO:0005515
Cmo04g00047 661 SMART arm_5 493 533 IPR000225 GO:0005515
Cmo04g00047 661 SMART arm_5 452 492 IPR000225 GO:0005515
Cmo04g00047 661 SMART arm_5 534 574 IPR000225 GO:0005515
Cmo04g00047 661 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 463 505 IPR000225 GO:0005515
Cmo04g00047 661 Pfam U-box domain 282 353 IPR003613 GO:0004842|GO:0016567
Cmo04g00047 661 MobiDBLite consensus disorder prediction 73 94 - -
Cmo04g00047 661 MobiDBLite consensus disorder prediction 256 277 - -
Cmo04g00047 661 PANTHER U BOX DOMAIN-CONTAINING 20 658 - -
Cmo04g00047 661 Coils Coil 157 177 - -
Cmo04g00047 661 Gene3D - 458 559 IPR011989 -
Cmo04g00047 661 Gene3D - 364 457 IPR011989 -
Cmo04g00047 661 SMART Ubox_2 285 348 IPR003613 GO:0004842|GO:0016567
Cmo04g00047 661 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 355 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00047 Cmo-Chr4:273414 Cmo13g00131 Cmo-Chr13:747202 3.41E-160 dispersed
Cmo04g02856 Cmo-Chr4:20359053 Cmo04g00047 Cmo-Chr4:273414 1.26E-36 dispersed
Cmo15g00984 Cmo-Chr15:5248499 Cmo04g00047 Cmo-Chr4:273414 0 transposed
Cmo04g00047 Cmo-Chr4:273414 Cmo04g01075 Cmo-Chr4:5408500 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00047 - - cmax:111484365 1201.04