Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g00047 | ATGGCCGGATTTGTGGCCAGCGACAGCGACAGTCCACCAGATGTGGCTCTACTGGACTTTGTTCGAGATGTTGTTCGAATGTCGGCGGGGACGAACAGTCTAAAGGTTTTCAAAAAGGATTGCACCGATCTCGTGCGTCGGATCGTGCTTTTGACGCATTTGTTTCAGGAAATCAGAGACTTTAATGGCGTCCAATTTCGACCTGTTCATACATCTTGCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGGGAGTGATTCATCTCCGAGTCCGTGGCTGTGTGATTTGGTGGCGGCATTGAAGGATACTAAACGCCTTGTTTTCATCGCTTCGACTTTCCGGTCCTGCAGTTCTTCTTCTGAGGAAGTTACCAGGAAGATACTCTTCCAATTCCAATGTGTGACGCTGAAGTTAGAGAATGCTTTGGGAAATCTTCCTTATGATCGCTTTGATATATCAGAGGAAGTTCAAGAACAGGTTGAATTAGTGAGAGCTCAGATGAGAAGAGCAGCAGAAAAATATGGCTCTCTGACCGCAATTCCTCCTTCAGTTGTTCAATCTCAGTTGCTAAAGAAAAACATGGATATGTTGAATCTGAACAACTGGGCTGATAACTTTGATGTTGAGGAGAATGGTGTTGTTGATCATGAGATTACAGTGAAATTTGATGAATTTCCAAATTGCAGAGGCTTCATGAATAATGGTGTGGATCAGCTGATTTTCGAAGGACTTGAGAAGAAACTTCCATCCTCCTCAGAGGCTTGTTCTGATGGACAGGATGCTTCTACCAAAAAGAGTGGAGATCAGGTGAAGAACTCAGATGGAGTTTCAATACCTGATGATTTTTTATGCCCCATTTCCCTGGAAATAATGAGGGATCCTGTTATTGTGTCCACAGGACAGACCTATGAGAGATCTTATGTGCAAAGGTGGATAGATTGTGGGAATACTACTTGCCCCAAAACTCAGCAGAAACTCCAAAACTTGACTCTCACCCCAAATTATGTACTGCGAAGTCTTATTACTCAGTGGTGTGTTGATCACAATATTGAGCAACCGACAGGATTAACCAATGGAAAGATCAAAAAGTGTGATGGATCATACCGTGATGTGTGTGAGGAGATGGCAGCCATTGAAACTCTGGTGCGCAAGCTAACTAGCCATTCGATTGCGGAGCAGAGAGCTTCTGTGACTGAAATTCGATCTCTATCAAAAAGAAGCACGGATAATAGAATTCTGATAGCTGAAGCAGGAGCAATACCAAATTTGGTCAATTTGTTAACTGCTGCTGATGTTTTAATACAAGAGAATGCAGTTACTTCCATTCTCAACCTTTCAATATATGAGAACAATAAGGGACTGATTATGCTTGCTGGTGCAGTACCTTCCATTGTCCAAGTTCTGAGAGTTGGGAGCATGGAAGCGAGAGAAAATGCAGCAGCTACACTTTTCAGCTTGTCTCTTGCTGATGAAAATAGGATAATCATTGGTGCTTCTGGGGCCACTCCGGCTCTTGTGGATTTACTTGAAACTGGAAGCCCAAGAGGGAAAAAGGATGCTGCAACCGCACTATTTAATTTGTGTATCTATCAGGGGAATAAGGGAAGGGCTGTGAGGGCAGGGATCATCCCAGCTCTATTAAGGATGCTCAACGTCTCAGGTAACTCCATGGTCGACGAAGCTCTCACAATAATGTCGGTCCTGGCCAGCCATCAAGAAGCAAAAGTAGCCATGGTGAAAGCCAGTACCATACCTGTTCTAATAGATCTGCTGAGGACCGGATTGGCTCGCAACAAAGAAAATGCTGCTGCTATTTTGCTTGCTCTATGTAAACGAGATACCGACAACCTTTCTTGCATAAGTAGGCTTGGGGCTAAGATTCCGCTGACTGAGCTCTCCAAGAGCGGCACAGAGAGAGCAAAAAGGAAGGCTACCTCACTGTTGGAACATCTTGGAAAACTACAGCAGCTATAG | 1986 | 44.01 | MAGFVASDSDSPPDVALLDFVRDVVRMSAGTNSLKVFKKDCTDLVRRIVLLTHLFQEIRDFNGVQFRPVHTSCSSSSSSSSSSSSSSGSDSSPSPWLCDLVAALKDTKRLVFIASTFRSCSSSSEEVTRKILFQFQCVTLKLENALGNLPYDRFDISEEVQEQVELVRAQMRRAAEKYGSLTAIPPSVVQSQLLKKNMDMLNLNNWADNFDVEENGVVDHEITVKFDEFPNCRGFMNNGVDQLIFEGLEKKLPSSSEACSDGQDASTKKSGDQVKNSDGVSIPDDFLCPISLEIMRDPVIVSTGQTYERSYVQRWIDCGNTTCPKTQQKLQNLTLTPNYVLRSLITQWCVDHNIEQPTGLTNGKIKKCDGSYRDVCEEMAAIETLVRKLTSHSIAEQRASVTEIRSLSKRSTDNRILIAEAGAIPNLVNLLTAADVLIQENAVTSILNLSIYENNKGLIMLAGAVPSIVQVLRVGSMEARENAAATLFSLSLADENRIIIGASGATPALVDLLETGSPRGKKDAATALFNLCIYQGNKGRAVRAGIIPALLRMLNVSGNSMVDEALTIMSVLASHQEAKVAMVKASTIPVLIDLLRTGLARNKENAAAILLALCKRDTDNLSCISRLGAKIPLTELSKSGTERAKRKATSLLEHLGKLQQL | 661 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 273414 | 276825 | + | CmoCh04G000470.1 | Cmo04g00047 | 379022 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g00047 | 661 | Pfam | Armadillo/beta-catenin-like repeat | 412 | 450 | IPR000225 | GO:0005515 | |
Cmo04g00047 | 661 | Pfam | Armadillo/beta-catenin-like repeat | 494 | 532 | IPR000225 | GO:0005515 | |
Cmo04g00047 | 661 | SUPERFAMILY | ARM repeat | 372 | 655 | IPR016024 | - | |
Cmo04g00047 | 661 | CDD | RING-Ubox_PUB | 286 | 328 | IPR045210 | - | |
Cmo04g00047 | 661 | Gene3D | - | 560 | 660 | IPR011989 | - | |
Cmo04g00047 | 661 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 422 | 464 | IPR000225 | GO:0005515 | |
Cmo04g00047 | 661 | MobiDBLite | consensus disorder prediction | 255 | 277 | - | - | |
Cmo04g00047 | 661 | SUPERFAMILY | RING/U-box | 276 | 356 | - | - | |
Cmo04g00047 | 661 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 11 | 20 | 658 | - | - | |
Cmo04g00047 | 661 | ProSiteProfiles | U-box domain profile. | 281 | 355 | IPR003613 | GO:0004842|GO:0016567 | |
Cmo04g00047 | 661 | SMART | arm_5 | 575 | 615 | IPR000225 | GO:0005515 | |
Cmo04g00047 | 661 | SMART | arm_5 | 411 | 451 | IPR000225 | GO:0005515 | |
Cmo04g00047 | 661 | SMART | arm_5 | 493 | 533 | IPR000225 | GO:0005515 | |
Cmo04g00047 | 661 | SMART | arm_5 | 452 | 492 | IPR000225 | GO:0005515 | |
Cmo04g00047 | 661 | SMART | arm_5 | 534 | 574 | IPR000225 | GO:0005515 | |
Cmo04g00047 | 661 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 463 | 505 | IPR000225 | GO:0005515 | |
Cmo04g00047 | 661 | Pfam | U-box domain | 282 | 353 | IPR003613 | GO:0004842|GO:0016567 | |
Cmo04g00047 | 661 | MobiDBLite | consensus disorder prediction | 73 | 94 | - | - | |
Cmo04g00047 | 661 | MobiDBLite | consensus disorder prediction | 256 | 277 | - | - | |
Cmo04g00047 | 661 | PANTHER | U BOX DOMAIN-CONTAINING | 20 | 658 | - | - | |
Cmo04g00047 | 661 | Coils | Coil | 157 | 177 | - | - | |
Cmo04g00047 | 661 | Gene3D | - | 458 | 559 | IPR011989 | - | |
Cmo04g00047 | 661 | Gene3D | - | 364 | 457 | IPR011989 | - | |
Cmo04g00047 | 661 | SMART | Ubox_2 | 285 | 348 | IPR003613 | GO:0004842|GO:0016567 | |
Cmo04g00047 | 661 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 279 | 355 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g00047 | Cmo-Chr4:273414 | Cmo13g00131 | Cmo-Chr13:747202 | 3.41E-160 | dispersed | |
Cmo04g02856 | Cmo-Chr4:20359053 | Cmo04g00047 | Cmo-Chr4:273414 | 1.26E-36 | dispersed | |
Cmo15g00984 | Cmo-Chr15:5248499 | Cmo04g00047 | Cmo-Chr4:273414 | 0 | transposed | |
Cmo04g00047 | Cmo-Chr4:273414 | Cmo04g01075 | Cmo-Chr4:5408500 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g00047 | - | - | cmax:111484365 | 1201.04 |