Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo04g00055 | ATGAGTAATCGGACAGGACTTCTTCGAATTCGCCTCTTGCGAGGCATCAATCTCGCCATTCGTGATGCTCCCACCCGCAGCAGCGATCCCTACGTCGTCATCTCCACCGCTAACCAGAAATTCAAATCTCGAGTGGTGAAAAAAAACTGCAATCCACAATGGAACGAGGAATTCACACTCTCAATTACGGACATCAACACACCAATCAAATTAGCAGTGTTCGACAAAGATCGGTTCACGAAAGACGACGGAATGGGGGATGCAGAGATCGACATAAAACCGTACATAGAGTGTTTGAATATGGGATTAGAGAGTCTGCCGAAGGGTTGTGTGGTGAAAAGGGTCCAACCAAGCAGATCAAACAACCTTGCAGATGAGAGCCCTTGCGTTTGGAACGATGGTAAGATCATTCAAGACATGACTCTCAGATTACAGAATGTTGAATGTGGTGAAATCGCGATTCAGATTCAGTTGTTCAATGCTTCTGGGATTAAAGGCATGAGAACCTACTCTTTATCCTGA | 522 | 45.4 | MSNRTGLLRIRLLRGINLAIRDAPTRSSDPYVVISTANQKFKSRVVKKNCNPQWNEEFTLSITDINTPIKLAVFDKDRFTKDDGMGDAEIDIKPYIECLNMGLESLPKGCVVKRVQPSRSNNLADESPCVWNDGKIIQDMTLRLQNVECGEIAIQIQLFNASGIKGMRTYSLS | 173 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 306494 | 308308 | + | CmoCh04G000550.1 | Cmo04g00055 | 379030 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo04g00055 | 173 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 1 | 165 | IPR044562 | - | |
| Cmo04g00055 | 173 | PRINTS | C2 domain signature | 24 | 36 | IPR000008 | - | |
| Cmo04g00055 | 173 | PRINTS | C2 domain signature | 48 | 61 | IPR000008 | - | |
| Cmo04g00055 | 173 | PRINTS | C2 domain signature | 69 | 77 | IPR000008 | - | |
| Cmo04g00055 | 173 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 2 | 102 | IPR035892 | - | |
| Cmo04g00055 | 173 | Pfam | C2 domain | 7 | 94 | IPR000008 | - | |
| Cmo04g00055 | 173 | ProSiteProfiles | C2 domain profile. | 1 | 108 | IPR000008 | - | |
| Cmo04g00055 | 173 | Gene3D | C2 domain | 1 | 166 | IPR035892 | - | |
| Cmo04g00055 | 173 | SMART | C2_3c | 7 | 104 | IPR000008 | - | |
| Cmo04g00055 | 173 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 10 | 1 | 165 | - | - | |
| Cmo04g00055 | 173 | CDD | C2_ArfGAP | 6 | 150 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo04g00055 | Cmo-Chr4:306494 | Cmo18g00057 | Cmo-Chr18:373965 | 4.21E-68 | dispersed | |
| Cmo04g00055 | Cmo-Chr4:306494 | Cmo04g02221 | Cmo-Chr4:16597224 | 4.70E-80 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo04g00055 | - | - | csv:101205028 | 313.153 |