Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00059 ATGGCCACGAAGTTCAAGAGTTTGTTGCAGAAACTCAAAACAACATTCCGATCGGGTTCCTCTAGAGACACCCAGGGCGCAGAGTATTTGGAGCAGATTGCAGCTAAGGAACAGAAGCTTATTCCCTTCCAAACCTTAGCTCAAGCTACCAACAATTTTCATCCAAATCACAAGCTCGGCGAAGGCGGCTTTGGCCCGGTTTACAAGGGAAAGTTAAAGGATGGAAGAGTTATTGCAGTTAAAAAGTTATCACATCATTCAAAACAGGGAAGAAGAGAGTTTATGAGTGAGGCCAAGTTGTTGGGTGGTGTGCAGCACAGAAATGTGGTTGCTTTGTTGGGATACTGTGTTCATGGTTCTGAGAAGCTACTGGTTTACGAGTACGTCTCCAATGAGAGCCTTGACAAGCTTCTCTTCAAATCCAGCAGACGTGGAGAGCTTGATTGGAAGAGGAGGTATGACATAATCGCTGGCATAGCACGAGGCTTGCAATATCTTCATGTAGATTCACATAATCTCATTATCCATCGTGATATCAAAGCTAGTAATATTTTGTTGGACGATAACTGGGTCCCTAAGATTGCTGATTTTGGAATGGCCCGTCTCTTCCCTGATGATCAAACTTATGTCAATACTCGTGTGGCTGGTACAAATGGATATATGGCTCCTGAATATCTAATGCAAGGTCGTCTATCAGCAAAGGTAGATGTTTTTAGCTTTGGTGTCTTGGTCCTCGAACTCATCAGTGGCCAGCGTAACTCGTCATTTGGCACATATTTCCAAGCTGAAAACCTAATTGATTGGGCTTACAAGCTATATAAGAAGGGCAGGAGTTTGGAGATAATGGACCCAACATTAGCATCCTCAGCTGTTCCTGACCAAGTGGCGATGTGCATTCAGATTGGATTACTTTGCACACAAGGTGATCCAAAACTACGGCCGACCATGCCACGTGTGGTTTTGCTCCTCTCAAAGAGACCTGGTACTTTAGAGGAACCTGTTGAGATATGA 1011 44.21 MATKFKSLLQKLKTTFRSGSSRDTQGAEYLEQIAAKEQKLIPFQTLAQATNNFHPNHKLGEGGFGPVYKGKLKDGRVIAVKKLSHHSKQGRREFMSEAKLLGGVQHRNVVALLGYCVHGSEKLLVYEYVSNESLDKLLFKSSRRGELDWKRRYDIIAGIARGLQYLHVDSHNLIIHRDIKASNILLDDNWVPKIADFGMARLFPDDQTYVNTRVAGTNGYMAPEYLMQGRLSAKVDVFSFGVLVLELISGQRNSSFGTYFQAENLIDWAYKLYKKGRSLEIMDPTLASSAVPDQVAMCIQIGLLCTQGDPKLRPTMPRVVLLLSKRPGTLEEPVEI 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 326522 328935 + CmoCh04G000590.1 Cmo04g00059 379034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00059 336 PANTHER RECEPTOR-LIKE KINASE 4 334 - -
Cmo04g00059 336 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 4 334 - -
Cmo04g00059 336 SUPERFAMILY Protein kinase-like (PK-like) 37 323 IPR011009 -
Cmo04g00059 336 SMART serkin_6 53 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00059 336 CDD STKc_IRAK 59 325 - -
Cmo04g00059 336 Gene3D Transferase(Phosphotransferase) domain 1 129 330 - -
Cmo04g00059 336 PIRSF ILK 23 331 - -
Cmo04g00059 336 Pfam Protein kinase domain 54 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00059 336 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Cmo04g00059 336 ProSiteProfiles Protein kinase domain profile. 53 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00059 336 Gene3D Phosphorylase Kinase; domain 1 15 128 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00059 Cmo-Chr4:326522 Cmo01g01224 Cmo-Chr1:9834744 2.64E-103 dispersed
Cmo11g00345 Cmo-Chr11:1693577 Cmo04g00059 Cmo-Chr4:326522 2.46E-102 transposed
Cmo04g00059 Cmo-Chr4:326522 Cmo04g01090 Cmo-Chr4:5510873 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74223 PF00069 Pkinase 1.80E-49 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00059 - - cmax:111488095 649.047