Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00068 ATGGCTGAACTCTCGAATCTCTCCTCGAGCCCCAGTGAAGAAAGCGACAAGAACGTGCTGCAGAAACACGTGGCGTTCTTCGATAGGAACCATGACGGCGTCGTTTATCCATGGGAAACCTTCAAAGGCTTCCGAGCGATCGGGGCGGGTTTGTTTCTGTCCTCCGTCGGTGCTTTTTTTGTTAACATCGGACTCAGCTCCAAAACCCGACCCGGGAAATGTCCCAACTTTTTATTCCCAATTGTGATAAAGAACATTCACCTTGCCAAACATGGAAGTGATTCTGGTGTATATGATTCCGAAGGAAGGTTTGTTGCATTAAAATTTGAAGAAATTTTCAAAAAGCATGCCCTAACGTATCCGGATGCCTTAACCGAAAAAGAGGTTAAAGCAATGCTGAAAGCAAATAGAGAGCCGAAGGACTATAAGGGATGGATTGGTGCATGGGCAGAGTGGACAGGTCTATACATCCTTTGCAAAGATGAGAATGGATTGCTTACAAAGCAAACGGTGAAGGGTGTTTACGATGGAAGCTTATTCGAACATATGGAGAAACACAGAGTATCAAAGAAGAAGAAATGA 582 44.5 MAELSNLSSSPSEESDKNVLQKHVAFFDRNHDGVVYPWETFKGFRAIGAGLFLSSVGAFFVNIGLSSKTRPGKCPNFLFPIVIKNIHLAKHGSDSGVYDSEGRFVALKFEEIFKKHALTYPDALTEKEVKAMLKANREPKDYKGWIGAWAEWTGLYILCKDENGLLTKQTVKGVYDGSLFEHMEKHRVSKKKK 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 370805 372386 - CmoCh04G000680.1 Cmo04g00068 379043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00068 193 PANTHER INACTIVE PEROXYGENASE-LIKE PROTEIN-RELATED 13 193 - -
Cmo04g00068 193 Pfam Caleosin related protein 16 183 IPR007736 -
Cmo04g00068 193 PANTHER PEROXYGENASE 3-RELATED 13 193 IPR007736 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00068 K17991 PXG; peroxygenase [EC:1.11.2.3] - csv:101213829 316.235
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00812 Cmo-Chr5:4812889 Cmo04g00068 Cmo-Chr4:370805 1.51E-28 transposed
Cmo17g00143 Cmo-Chr17:811225 Cmo04g00068 Cmo-Chr4:370805 1.06E-58 transposed
Cmo04g00068 Cmo-Chr4:370805 Cmo04g01096 Cmo-Chr4:5550510 4.56E-104 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo04g01096 CCT 225 399 Pollen Coat Proteome AT1G23240 58.9 1.1e-59 227.3
Cmo04g00068 . 13 193 Pollen Coat Proteome AT1G23240 54.7 4.4e-56 215.3
Cmo04g01096 CCT 225 399 Pollen Coat Proteome AT1G23240 58.9 1.1e-59 227.3
Cmo04g00068 . 13 193 Pollen Coat Proteome AT1G23240 54.7 4.4e-56 215.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007695 2 1 0 0 3 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 1 2 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00068 Cmo_Chr04 FPKM 4.182927 2.07639 422.250092 407.901642 31.218494 39.568272 33.60638 1.155805 0.541858 0.605764