Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00084 ATGGTTTCCAGGTCGTATTCCAATTTACTCGAACTCGCCACCGGAGAATCGCCGTCTTTCGGCCGTATAAACCGCGAAATCCCCCGGATTGTGACCGTCGCCGGCTTAATCTCCGACGTCGACAACGACCCATCCGAGAGCGTCTCCTCGGAGCCGTCCTCCTCCTCCACCTCTCGCGACCGGATTATCATCGTCGCCAATGAGCTTCCCATCAGAGCCCACCGGATATCCGGCAACGGCGGAGCCACCACCAACTGGACTTTCAGCTGGGATGAAAATTCCCTTCTCCTCCAGCTGAAAGACGGGCTGGGAGATGATGATTTTGAAGTGTTTTATGTGGGTTGTCTTAAGGAAGATATTCACCCAAATGAACAAGATGAAGTCTCTCAAATACTTCTAGAGACTTTCAAATGCGTGCCAACATTTCTCACTCAAGATCTTTACACAAGGTACTACCATGGCTTCTGCAAGCAGCAGCTATGGCCTCTGTTTCATTACATGTTGCCTCTGTCGCCTGACCTCGGCGGTCGATTCAATCGACCACTATGGCAGGCTTACGTTAAAGTTAATAAAATCTTTGCTGATAAGATCATGGAAGTGATCAATCCTGAAGACGATTTTGTTTGGATTCATGATTATCATCTTATGGTACTGCCTACTTTTTTGAGGAAGAGATTCAATAGGGTTAAGCTTGGATTCTTTTTGCATAGCCCTTTCCCTTCGTCGGAGATATATCGAACACTTCCGATCCGGGAGGAGCTCTTACGAGCACTCCTGAATTCAGATTTGATAGGGTTTCATACTTTTGATTATGCTAGGCATTTTCTATCTTGTTGTAGTCGAATGTTTGGTCTAACGTATGAGTCGAAACGGGGTTATATCGGGATAGAGTATTACGGTCGAACGATTAGTATTAAGATCCTTCCTGTTGGGATTCATATGGGTCAGCTTCAGTCTGTTTTGAGTCTTGGGAAGACTGAGGAGAAGGTTAGTGAGGTTATAAAGCAGTTTCGTGACCGGGATCGGATCATGTTGCTCGGTGTGGACGATATGGACATATTTAAGGGGATAAGTTTGAAGCTTTTGGCTATGGAGCAGTTGTTGATGACGCACCCTGAGTGGGAGGGGAAGGTTGTGTTGGTGCAGATTGCCAACCCTGCAAGAGGTAGAGGGAAAGATGTTAAGGAAGTTCGGGACGAGATGAAGGCAACTGTTAGGCGGATTAACGATACGTTTGGGAGACCTGGGTACGAGCCAATTGTGTTGATTGAGGAACCACTCAAATTCTATGAGAGAATTGCATATTATACGGTTGCTGAATGTTGTTTGGTCACAGCGGTTCGAGACGGTATGAATCTCATTCCATACGAGTACATTGTCAGTCGTCAAGGGAATGATAAGTTGGATAAACTCATGGGCTGGGAATCATCAGCTCCGAAGAAGAGTATGTTGGTATTATCCGAGTTCATCGGGTGCTCTCCATCCTTAAGTGGAGCGATTCGAGTTAATCCCTGGAATATCGATGCTGTAGCTGATGCAATGGAATGTGCATTGGAGATGGCAGATGCAGAGAAGCAGCTCCGCCATGAGAAGCATTTTAGATATGTGAGCACGCACGATGTCGGGTATTGGGCTCGGAGTTTCCTACAAGATTTGGAGAGGACTTGTAGGGATCATGTGAGGCAGAGATGTTGGGGTATCGGGTTCGGTTTAAGTTTTAGAGTTGTGGCTCTTGATCTGAACTTCAGGAAGCTCGCTATGGAACACATAATTTCGACTTATAAGAGGACGAAGTCTCGGGCTATTCTTTTGGACTACGATGGTACGTTAATGCCTCAAGCTTCAATTGACAAGGGCCCTACTTCAAAATGCCTCGAAACTCTTGATACCTTGTGTCGAGATAAGAAAAATACAGTGTTCATTGTGAGTGCGAAAACTCGAAAAACACTTGCTGAATGGTTTGCCCCTTGCGAAAAACTCAGCATTGCTGCCGAGCACGGATACTTTATTAGGCTAAAGCAGGATGAGGAATGGGAGACCAGTTTGCCAGTTGCAGATTGCTGTTGGAAGCAGATTGTGCAGCCAGTGATGAAACTCTACACTGAAACAACCGATGGATCGACAATCGAAGATCGAGAAACCGCACTCGGATGGTGTTATGAAGATGCAGATCCAGATTTCGGTTCGTGTCAAGCTAAGGAGCTCCTGGATCATCTCGAAAGCGTCCTAGCCAACGAGCCAGTTACCGTAAAAAGTGGTCAAAGCATTGTGGAAGTCAAACCACAGGGCGTCAGCAAGGGTCTCGTAGCGAAACGACTACTCTCTGCAATGCAAGATAAGGGGACCCCAGCAGATTTTGTTCTCTGCATTGGCGACGACCGATCGGATGAAGACATGTTCAAGGTGATCTCAAGTTCCATGGCAGGTCCATCGATTGCACCCCGAGCTGAAATTTTTGCATGTACGGTAGGGAAGAAACCAAGCAAAGCCAAGTATTACCTCGACGATCCATCGGAAATTGCAAGGCTGATGCATGGTTTGGCTTCGGTGTCGAGGCCGAACGTCCCGCCTTATCCATCCCCAAGCTGA 2589 46.93 MVSRSYSNLLELATGESPSFGRINREIPRIVTVAGLISDVDNDPSESVSSEPSSSSTSRDRIIIVANELPIRAHRISGNGGATTNWTFSWDENSLLLQLKDGLGDDDFEVFYVGCLKEDIHPNEQDEVSQILLETFKCVPTFLTQDLYTRYYHGFCKQQLWPLFHYMLPLSPDLGGRFNRPLWQAYVKVNKIFADKIMEVINPEDDFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRMFGLTYESKRGYIGIEYYGRTISIKILPVGIHMGQLQSVLSLGKTEEKVSEVIKQFRDRDRIMLLGVDDMDIFKGISLKLLAMEQLLMTHPEWEGKVVLVQIANPARGRGKDVKEVRDEMKATVRRINDTFGRPGYEPIVLIEEPLKFYERIAYYTVAECCLVTAVRDGMNLIPYEYIVSRQGNDKLDKLMGWESSAPKKSMLVLSEFIGCSPSLSGAIRVNPWNIDAVADAMECALEMADAEKQLRHEKHFRYVSTHDVGYWARSFLQDLERTCRDHVRQRCWGIGFGLSFRVVALDLNFRKLAMEHIISTYKRTKSRAILLDYDGTLMPQASIDKGPTSKCLETLDTLCRDKKNTVFIVSAKTRKTLAEWFAPCEKLSIAAEHGYFIRLKQDEEWETSLPVADCCWKQIVQPVMKLYTETTDGSTIEDRETALGWCYEDADPDFGSCQAKELLDHLESVLANEPVTVKSGQSIVEVKPQGVSKGLVAKRLLSAMQDKGTPADFVLCIGDDRSDEDMFKVISSSMAGPSIAPRAEIFACTVGKKPSKAKYYLDDPSEIARLMHGLASVSRPNVPPYPSPS 862
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 456515 460234 + CmoCh04G000840.1 Cmo04g00084 379059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00084 862 Gene3D Glycogen Phosphorylase B; 319 537 - -
Cmo04g00084 862 Pfam Glycosyltransferase family 20 61 553 IPR001830 GO:0003824|GO:0005992
Cmo04g00084 862 TIGRFAM T6PP: trehalose-phosphatase 598 847 IPR003337 GO:0003824|GO:0005992
Cmo04g00084 862 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 852 IPR001830 GO:0003824|GO:0005992
Cmo04g00084 862 SUPERFAMILY HAD-like 600 845 IPR036412 -
Cmo04g00084 862 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 602 803 IPR006379 -
Cmo04g00084 862 CDD GT20_TPS 61 553 IPR001830 GO:0003824|GO:0005992
Cmo04g00084 862 Gene3D Glycogen Phosphorylase B; 53 318 - -
Cmo04g00084 862 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 6 1 852 - -
Cmo04g00084 862 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 556 - -
Cmo04g00084 862 Pfam Trehalose-phosphatase 603 838 IPR003337 GO:0003824|GO:0005992
Cmo04g00084 862 Gene3D - 599 716 IPR023214 -
Cmo04g00084 862 Gene3D - 729 855 IPR023214 -
Cmo04g00084 862 CDD HAD_TPP 601 839 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00084 Cmo-Chr4:456515 Cmo06g00655 Cmo-Chr6:3295418 0 dispersed
Cmo04g00084 Cmo-Chr4:456515 Cmo04g01112 Cmo-Chr4:5669684 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00084 K16055 - vvi:100252552 1457.2