Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00093 ATGGGCGGTTTGGGGTCGGTTCTTTTCACCGCCGTTGCAGTGGCGGTGGTGGCAGTAGTGGTCCATTTTTACTATGGAGTGTGGAGGAGGACGGCAGAGATTAGGAGGAAGCTACGAGCACAGGGAGTGACGGGACCGTCGCCCTCGCTTCTGTACGGAAACTTGCCGGAGATGCAGGAGATCCAGTTGGAGGCGGCGGCGGCGGCCATGGCTTCTCCGCCACATCATGCGTCGGTGATTGTTGCTCATGATTATACCTCCACTCTCTTCCCTTATTTCGTCAAGTGGAGGAAACAATACGGCCCATTATACACATACTCGACAGGGACGAGGCAGCATCTGTACGCGAACCACGTGGACCTGGTGAAGGACTTGAGCCTCACCAACCATCTCCACTTGGGCAAGCCCTCCTACGTCACCAAGAAGCTCGCCCCAATCCTTGGCCACAGCATCGTCCGAGCCAACGGCCCCGTCTGGGCCCTGCAGCGCAAGATCATAGCGCCCGAGTTCTTCATGGACCGGGTCCGGGTCATGGCGGCGCTGATGACCGAGGCGGCGGCTGCGATGCTGCAGAAATGGGAGGAGAGGATCGACGAAGGAGACGGAGCCACGGCGGAGATCGACGTGGATGAGGCTCTTAGAGAATTCTCGGCGGATGTGATTTCTAGGGCTTGCTTTGGGAGCTCGTATGAGAAGGGGAAACGGATTTTTTCCAAGCTTAGGGTTCTTCAGAAGCTGCTTAGCGAAGGGAATTTCCTGTTTGGCTACGTTTCTCTCAGCGACCGATTGTTTCAACAAAGCAAACACAGAACAATCAAGAAGCTGGAGAAGGAGATCGAATCATTAATCTGGGAAACAGTTCAACAACGCCAAAAAGAATGCTCCAAAACGTCGTCGGATAAGGATCTCTTGCAGCTCATAATGGAGGCCGCCATGAATGACCCAACCGTAGGGTCCAATTGTAACGAGTCCCCAAAAAAGTTCATCGTTGACAACTGCAAGAGCATCTACTTCGCCGGCCATGAGTCCACCGCCGTCGCCGCCACTTGGTCCTTGATGCTCCTCGCTCTCCACCCCGAATGGCAAGACCGTATTCGGTCCGAGTTTACTCAAGCTTGCCCCGATGGCCGTGTCAACATGACAGCCATCTCTCAACTCAAATCAGCGAGTATGGTGGTCCAAGAAACGTTGCGATTGTACCCACCAGCAGCGTTTGTGGCAAGGGAGACATTTTCTGAGACGCGACTAGGGAACGTAGTGATTCCAAAGGGTGTCTACTTATGGACTTTGATTCCAACTTTACATAGAGAGGTTGAAATATGGGGAGAAAACGCGAATAAGTTTAAGCCAGAACGGTTCGTGAATGGCATAGCCAAGGCTTGCAAGTTTCCTCAAGCATACGTGCCATTTGGGGCAGGGCCTCGACTATGTTTAGGGAAGAACTTTGCGTTGGTTCAGTTGAAGATCGTTATTTCTCTGATAGTTTCCAAGTTTAGATTTTCATTGTCTTCTGAATATCGCCATTCTCCGTCGTATAGAATGATCGTAGAGCCGGCCAATGGGATGAAGATCATCTTCAAAAGGGTTTAA 1590 52.08 MGGLGSVLFTAVAVAVVAVVVHFYYGVWRRTAEIRRKLRAQGVTGPSPSLLYGNLPEMQEIQLEAAAAAMASPPHHASVIVAHDYTSTLFPYFVKWRKQYGPLYTYSTGTRQHLYANHVDLVKDLSLTNHLHLGKPSYVTKKLAPILGHSIVRANGPVWALQRKIIAPEFFMDRVRVMAALMTEAAAAMLQKWEERIDEGDGATAEIDVDEALREFSADVISRACFGSSYEKGKRIFSKLRVLQKLLSEGNFLFGYVSLSDRLFQQSKHRTIKKLEKEIESLIWETVQQRQKECSKTSSDKDLLQLIMEAAMNDPTVGSNCNESPKKFIVDNCKSIYFAGHESTAVAATWSLMLLALHPEWQDRIRSEFTQACPDGRVNMTAISQLKSASMVVQETLRLYPPAAFVARETFSETRLGNVVIPKGVYLWTLIPTLHREVEIWGENANKFKPERFVNGIAKACKFPQAYVPFGAGPRLCLGKNFALVQLKIVISLIVSKFRFSLSSEYRHSPSYRMIVEPANGMKIIFKRV 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 495982 499362 + CmoCh04G000930.1 Cmo04g00093 379068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00093 529 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 470 479 IPR017972 GO:0005506|GO:0016705
Cmo04g00093 529 Coils Coil 272 292 - -
Cmo04g00093 529 Pfam Cytochrome P450 87 524 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g00093 529 Gene3D Cytochrome P450 27 529 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g00093 529 PANTHER CYTOCHROME P450 FAMILY MEMBER 7 524 - -
Cmo04g00093 529 PANTHER CYTOCHROME P450 714A1-RELATED 7 524 - -
Cmo04g00093 529 SUPERFAMILY Cytochrome P450 84 527 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g00093 529 PRINTS E-class P450 group I signature 97 116 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g00093 529 PRINTS E-class P450 group I signature 216 234 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g00093 529 PRINTS E-class P450 group I signature 328 345 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g00093 529 PRINTS E-class P450 group I signature 348 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g00093 529 PRINTS E-class P450 group I signature 467 477 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g00093 529 PRINTS E-class P450 group I signature 477 500 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g00093 529 PRINTS P450 superfamily signature 339 356 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g00093 529 PRINTS P450 superfamily signature 391 402 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g00093 529 PRINTS P450 superfamily signature 468 477 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo04g00093 529 PRINTS P450 superfamily signature 477 488 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00093 Cmo-Chr4:495982 Cmo04g01119 Cmo-Chr4:5710970 0 dispersed
Cmo04g00093 Cmo-Chr4:495982 Cmo04g00094 Cmo-Chr4:500120 5.88E-44 tandem
Cmo04g00093 Cmo-Chr4:495982 Cmo04g01118 Cmo-Chr4:5706645 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00093 K20661 - csv:101216582 820.846