Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00096 ATGGAGACCTCGGCTTCCAATTCTGATCCTTATCCCAATTCTTCTTCACCCACAACTTCTCCTACCTCCTCCAGATTTGGGGTCTCGATCCCTTCGCTCAATTTCTTCCGTTCGCCTCTGTCCGTCATTTTGGATTACTCTGGAATTCTTCCCACTAGGGCTGTTCCTCATGAATCGGAACCTATAATCAACGGCTCTGCCACCCCTGATTTGCGGGTTTATTCTCAAAATCAGAATCACTTGATGACCACCACTTCTTCTTCTTCTTCTTCTTCTAGTACTAGTCCCACCTCCTCCTCCTCCGGTAATACCAGCCCCTCTGGGGAGGTTTCGATTAGGATTATTGGGTCTGGGGAGCAAGATCCTTCTCCGGCTCTGGTTGGACAAGCTGGCTATGAGCAAAATGGTGGACTTCCTGTTTCTGGGGATCAGCCGGAATCCCCTGATGAGGAACGAGTTCCTTTGGTGTCCACTGCTTCTTCGTCTATTCAATCTGGAAGCAGTCGTGTTTCAGAATCTGGAAATGGCGTGGAAGAGAGTGTTAATAGAGATTCGTCTTATCAGAGATACGATATCCAGCAGGTTGCCAGGTGGATTGAACAGATTCTTCCTTTCTCTTTGCTACTGCTGATAGTCTTTATCCGTCAGCATTTGGAAGGTTTTTTCATCACAATTTGTATATCAGCTGTTATGTATAAGTCAAACGATATTGTCAAGAAACAGACTGCTCTAAAGGGGGAGAGGAAAATTTCTGTCCTTGCTGGGACATCTATTGCATTTTTGGTTCATGTTATTGGAATTTACTGGTGGTGCCATAGTGATGATCTTCTGTACCCGTTAGTCATGCTTCCACCAAAGACAGTACCACCATTTTGGCATGCCTTGTTCATAATCTTGGTTAACGATACGATGGCGAGGCAGGTTGCAATGGCTCTCAAATGTCTTCTTCTTATTTACTACAAGAATGGCAGAGGCCATAATTTTCGCCGGCAGGGTCAAATTTTAACTCTCATGGAGTACACTCTTCTGTTGTATCGTGCATTATTACCGACACCTGTATGGTACCGGTTCTTCTTGAACAAAGATCAAGGAAGCCTTTTTTCATCACTGACAACGGGATTGTATTTAACTTTCAAGCTAACGTCTGTTGTTGAGAAGATTCAATCATTCGTGGCTGCATTTAAGGCTCTATCACAAAAAGAAGTCCATTATGGATCATATGCCACATCAGAACAGGTAAGTGCTGCGGGAGACCTCTGTGCTATTTGCCAGGAGAAGATGAATGCTCCAATCCTGTTACGCTGTAAGCACATCTTCTGTGAAGATTGTGTTTCTGAATGGTTTGAAAGAGAGAGAACTTGCCCTCTCTGCCGGGCGCTGGTAAAGCCAGCAGAACTCCGAACATTTGGCGACGGGTCGACCAGCTTACTCTTCCAGTTGTTTTAG 1446 44.95 METSASNSDPYPNSSSPTTSPTSSRFGVSIPSLNFFRSPLSVILDYSGILPTRAVPHESEPIINGSATPDLRVYSQNQNHLMTTTSSSSSSSSTSPTSSSSGNTSPSGEVSIRIIGSGEQDPSPALVGQAGYEQNGGLPVSGDQPESPDEERVPLVSTASSSIQSGSSRVSESGNGVEESVNRDSSYQRYDIQQVARWIEQILPFSLLLLIVFIRQHLEGFFITICISAVMYKSNDIVKKQTALKGERKISVLAGTSIAFLVHVIGIYWWCHSDDLLYPLVMLPPKTVPPFWHALFIILVNDTMARQVAMALKCLLLIYYKNGRGHNFRRQGQILTLMEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLTSVVEKIQSFVAAFKALSQKEVHYGSYATSEQVSAAGDLCAICQEKMNAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAELRTFGDGSTSLLFQLF 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 503942 509147 - CmoCh04G000960.1 Cmo04g00096 379071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00096 481 Pfam Zinc finger, C3HC4 type (RING finger) 418 461 - -
Cmo04g00096 481 ProSitePatterns Zinc finger RING-type signature. 435 444 IPR017907 -
Cmo04g00096 481 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 13 481 - -
Cmo04g00096 481 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 13 481 IPR044235 GO:0061630|GO:1904294
Cmo04g00096 481 MobiDBLite consensus disorder prediction 1 28 - -
Cmo04g00096 481 ProSiteProfiles Zinc finger RING-type profile. 420 458 IPR001841 -
Cmo04g00096 481 SUPERFAMILY RING/U-box 413 463 - -
Cmo04g00096 481 MobiDBLite consensus disorder prediction 81 111 - -
Cmo04g00096 481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 394 467 IPR013083 -
Cmo04g00096 481 MobiDBLite consensus disorder prediction 154 183 - -
Cmo04g00096 481 CDD RING-HC_RNFT1_like 419 458 - -
Cmo04g00096 481 MobiDBLite consensus disorder prediction 81 183 - -
Cmo04g00096 481 SMART ring_2 420 457 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00096 Cmo-Chr4:503942 Cmo07g01242 Cmo-Chr7:6789457 0 dispersed
Cmo04g00096 Cmo-Chr4:503942 Cmo04g01120 Cmo-Chr4:5713697 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00096 - K22379 csv:101207430 795.808