Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g00096 | ATGGAGACCTCGGCTTCCAATTCTGATCCTTATCCCAATTCTTCTTCACCCACAACTTCTCCTACCTCCTCCAGATTTGGGGTCTCGATCCCTTCGCTCAATTTCTTCCGTTCGCCTCTGTCCGTCATTTTGGATTACTCTGGAATTCTTCCCACTAGGGCTGTTCCTCATGAATCGGAACCTATAATCAACGGCTCTGCCACCCCTGATTTGCGGGTTTATTCTCAAAATCAGAATCACTTGATGACCACCACTTCTTCTTCTTCTTCTTCTTCTAGTACTAGTCCCACCTCCTCCTCCTCCGGTAATACCAGCCCCTCTGGGGAGGTTTCGATTAGGATTATTGGGTCTGGGGAGCAAGATCCTTCTCCGGCTCTGGTTGGACAAGCTGGCTATGAGCAAAATGGTGGACTTCCTGTTTCTGGGGATCAGCCGGAATCCCCTGATGAGGAACGAGTTCCTTTGGTGTCCACTGCTTCTTCGTCTATTCAATCTGGAAGCAGTCGTGTTTCAGAATCTGGAAATGGCGTGGAAGAGAGTGTTAATAGAGATTCGTCTTATCAGAGATACGATATCCAGCAGGTTGCCAGGTGGATTGAACAGATTCTTCCTTTCTCTTTGCTACTGCTGATAGTCTTTATCCGTCAGCATTTGGAAGGTTTTTTCATCACAATTTGTATATCAGCTGTTATGTATAAGTCAAACGATATTGTCAAGAAACAGACTGCTCTAAAGGGGGAGAGGAAAATTTCTGTCCTTGCTGGGACATCTATTGCATTTTTGGTTCATGTTATTGGAATTTACTGGTGGTGCCATAGTGATGATCTTCTGTACCCGTTAGTCATGCTTCCACCAAAGACAGTACCACCATTTTGGCATGCCTTGTTCATAATCTTGGTTAACGATACGATGGCGAGGCAGGTTGCAATGGCTCTCAAATGTCTTCTTCTTATTTACTACAAGAATGGCAGAGGCCATAATTTTCGCCGGCAGGGTCAAATTTTAACTCTCATGGAGTACACTCTTCTGTTGTATCGTGCATTATTACCGACACCTGTATGGTACCGGTTCTTCTTGAACAAAGATCAAGGAAGCCTTTTTTCATCACTGACAACGGGATTGTATTTAACTTTCAAGCTAACGTCTGTTGTTGAGAAGATTCAATCATTCGTGGCTGCATTTAAGGCTCTATCACAAAAAGAAGTCCATTATGGATCATATGCCACATCAGAACAGGTAAGTGCTGCGGGAGACCTCTGTGCTATTTGCCAGGAGAAGATGAATGCTCCAATCCTGTTACGCTGTAAGCACATCTTCTGTGAAGATTGTGTTTCTGAATGGTTTGAAAGAGAGAGAACTTGCCCTCTCTGCCGGGCGCTGGTAAAGCCAGCAGAACTCCGAACATTTGGCGACGGGTCGACCAGCTTACTCTTCCAGTTGTTTTAG | 1446 | 44.95 | METSASNSDPYPNSSSPTTSPTSSRFGVSIPSLNFFRSPLSVILDYSGILPTRAVPHESEPIINGSATPDLRVYSQNQNHLMTTTSSSSSSSSTSPTSSSSGNTSPSGEVSIRIIGSGEQDPSPALVGQAGYEQNGGLPVSGDQPESPDEERVPLVSTASSSIQSGSSRVSESGNGVEESVNRDSSYQRYDIQQVARWIEQILPFSLLLLIVFIRQHLEGFFITICISAVMYKSNDIVKKQTALKGERKISVLAGTSIAFLVHVIGIYWWCHSDDLLYPLVMLPPKTVPPFWHALFIILVNDTMARQVAMALKCLLLIYYKNGRGHNFRRQGQILTLMEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLTSVVEKIQSFVAAFKALSQKEVHYGSYATSEQVSAAGDLCAICQEKMNAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAELRTFGDGSTSLLFQLF | 481 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 503942 | 509147 | - | CmoCh04G000960.1 | Cmo04g00096 | 379071 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g00096 | 481 | Pfam | Zinc finger, C3HC4 type (RING finger) | 418 | 461 | - | - | |
Cmo04g00096 | 481 | ProSitePatterns | Zinc finger RING-type signature. | 435 | 444 | IPR017907 | - | |
Cmo04g00096 | 481 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 13 | 481 | - | - | |
Cmo04g00096 | 481 | PANTHER | UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN | 13 | 481 | IPR044235 | GO:0061630|GO:1904294 | |
Cmo04g00096 | 481 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Cmo04g00096 | 481 | ProSiteProfiles | Zinc finger RING-type profile. | 420 | 458 | IPR001841 | - | |
Cmo04g00096 | 481 | SUPERFAMILY | RING/U-box | 413 | 463 | - | - | |
Cmo04g00096 | 481 | MobiDBLite | consensus disorder prediction | 81 | 111 | - | - | |
Cmo04g00096 | 481 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 394 | 467 | IPR013083 | - | |
Cmo04g00096 | 481 | MobiDBLite | consensus disorder prediction | 154 | 183 | - | - | |
Cmo04g00096 | 481 | CDD | RING-HC_RNFT1_like | 419 | 458 | - | - | |
Cmo04g00096 | 481 | MobiDBLite | consensus disorder prediction | 81 | 183 | - | - | |
Cmo04g00096 | 481 | SMART | ring_2 | 420 | 457 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g00096 | Cmo-Chr4:503942 | Cmo07g01242 | Cmo-Chr7:6789457 | 0 | dispersed | |
Cmo04g00096 | Cmo-Chr4:503942 | Cmo04g01120 | Cmo-Chr4:5713697 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g00096 | - | K22379 | csv:101207430 | 795.808 |