Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00099 ATGGAGGCTGCCGGTTCCTCTTCTTCTCAAAATGGGTACCAACCCCATGTTCTTGCTGTTGATGATAATCTCGTTGATCGTAAGCTCGTTGAGAAATTGCTCAAAAACTCCTCTTTTAAAGGTAAAAATACAAAAGTTTTCATTTTTTTCATTCAAAACAGGATTTCAGAATCTGGGCAAGAAAAAAAAAGCAATCTTTTTGTTTGTTTGGTTGTTTGTTTGTTTGTTTGTGCAGTGACAACAGCAGAAAATGGTCTCAGTGCTCTGGAGTTTCTGGGTTTGTCGGATGAACATGAACATGAACACAACAACATAGAATGCGGTGATAGGTCGAAGGTGAACATGATCATCACGGATTACTGCATGCCCGGAATGTCCGGATATGAACTCCTCAAGAAAATCAAGAGATGTTCGAGGATGAAGGAAGTTCCTGTAGTGGTGGTGTCATCAGAGAATGTGCCCACTCGCATCAACAAGTGTTTGGAGGAAGGAGCAGAGATGTTCATGCTCAAACCTTTGAAGCAATCTGATGTGGTGAAGCTCAAGTGCCAGCTGATGATGAACTGA 567 41.62 MEAAGSSSSQNGYQPHVLAVDDNLVDRKLVEKLLKNSSFKGKNTKVFIFFIQNRISESGQEKKSNLFVCLVVCLFVCAVTTAENGLSALEFLGLSDEHEHEHNNIECGDRSKVNMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVSSENVPTRINKCLEEGAEMFMLKPLKQSDVVKLKCQLMMN 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 525284 526115 - CmoCh04G000990.1 Cmo04g00099 379074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00099 188 ProSiteProfiles Response regulatory domain profile. 16 186 IPR001789 GO:0000160
Cmo04g00099 188 Pfam Response regulator receiver domain 104 180 IPR001789 GO:0000160
Cmo04g00099 188 PANTHER TWO-COMPONENT RESPONSE REGULATOR 74 187 IPR045279 GO:0009736
Cmo04g00099 188 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 40 IPR045279 GO:0009736
Cmo04g00099 188 SUPERFAMILY CheY-like 76 179 IPR011006 -
Cmo04g00099 188 Gene3D - 10 187 - -
Cmo04g00099 188 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR17-LIKE 74 187 - -
Cmo04g00099 188 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR17-LIKE 5 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00099 Cmo-Chr4:525284 Cmo04g01675 Cmo-Chr4:8497777 1.81E-42 dispersed
Cmo04g00099 Cmo-Chr4:525284 Cmo04g00318 Cmo-Chr4:1580019 6.33E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9502 PF00072 Response_reg 2.50E-15 CL0304 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00099 K14492 - csv:101208898 216.853