Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00101 ATGAAACGGCTGCTTGAGCTCATTGTGTTGTTCGTTTTGGCTCCACTCTGTGCGAGATGTCTAAACCTATCTTTAAACGACGACGTTTTGGGCCTGATAGTGTTTAAAGCTGCTGTTGAAGATCCAAAGCAGAACCTCGCGACCTGGGACGAAGATGACGATAGTCCCTGCAACTGGACTGGTGTTCAATGCAGTCCCAGATCCAAACGGGTTGTCGAGCTCAACCTCGACGGATTCTCTCTCTCGGGTCGGCTCGGTCGAGGGCTTTTCCAGTTGGAGTTTCTGCAGAGATTGTCGTTATCAAAGAACAATCTCAGTGGAAATTTAAGCCCCAATTTTGCTCGAGTGGATAATCTTCAGGTGATTGATTTGAGCGGGAATAATTTGTCTGGAACTGTTCCAGATGATTTTTTCCGTCAATGTGGGTCTTTGAGAGTTGTTTCTTTGGCCAACAACAAATTTGATGGGAAAATTCCTGATAGTTTGAGCTCGTGTGGGAGTCTTATTGCTGTTAACTTGTCCTCGAATCAGTTTTCGGGTCCTTTGCCCTCTGGGGTTTTGTCTCTCAGTGGGCTTCGATCATTGGACTTGTCTGATAATGCTCTGGTGGGTGAAATTCCAAAGGTAATTGAGAATTTATATAACCTGCGGACTCTTAACTTGAGGAAGAATCAATTTTCTTCACAGATTCCTGATGGTATTGGCAGCTGCTTGCTTCTGAGGTCCATTGATCTTAGTGAGAATTCATTCTCTGGGAACCTTCCTCAGACTATGCAGAAACTTGTTCTTTGTAGTGATCTGATTTTGAGCAGGAATTTGTTCGAAGGAAATATTCCAGAGTGGATAGGAGAAATGAAAAGCCTTGAAACTCTGGACTTTTCCGGGAACAATTTCACAGGTCATATTCCAACTACAATGGGGAATCTTCAATATCTAAAAGTATTAAATCTCTCTTCAAATGCCTTTACTGATAGCTTTCCAGAGTCTGCGATGAAATGCCAAAACCTTCTGGCACTAGATATCAGTCATAATTTCATCATGGGTAATCTTCCAGCGATTGGAAGTTTAGCCAAGCTGCAGTTTCTGAACCTGTCCGGGAATTCTTTTGTTGGACCTATTCCAGAAACTATTGGAGATCTTAAAGCTTTGAGCGTTCTCGATTTGAGCAGAAATCGTCTGAATGAAAGCATTCCCAAAGCGATTGGAGGAGCTGTGTCCCTAATGGAACTGAAGCTGGATGAAAATTTTCTAGGGGGTGAACTTCCCTCTTCAATTGGTCACTGTTCTTTCCTTACAACTTTGTTCACATCACACAATAACTTAACTGGCCCGATACCTGCAGAGTTAGCTAAACTCTCTTATCTCCGAAATGTCGACTTATCCTTTAACAACCTCAATGGAACTCTTCCAAAGCAGTTGTCTAATCTTCCAAACCTTCTTTTGTTCAATATTTCTCATAACGACCTCAAGGGTGAGCTGCCTGGTGGTGTATTCTTTAACACCATCTCCCCTTCATCCGTAGCTGGAAATCCATCCCTTTGTGGCTCTGTCGTTAATAAGTCTTGCCCTTCTGTTCTTCCAAAACCTATTGTGCTCGATCCCAACTCCACTTCAGATTCCATTTCCAGCTCACTGCCTCCAAGTACTAATCTCAGAAGAAATAGAAATATCCTCAGCATTTCTGCACTGGTTGCCATTGGCGCCGCTGCTTTCATCATCATAGGCATCATATTGATCACCATCCTCAACAGTCGTGTTCAACCGCCCACGTCTTCTTTGTCTGCAGCTGCACTTGCATTATCCATAGGGGATGATTTCAGTCATTCCTCCAGCCCTGATGCGAATTCGGGAAAGCTTGTGGTGTTGTCAGGAGAGCTTGACTTTAGCGCAGGAGCACATGCCCTGCTGAACAAGGATTGTGAGCTCGGGTGCGGTGGGTTTGGAGCAGTTTACCATACCGTTCTGCGGGATGGACACTCTGTTGCAATCAAGAAGCTCACAGTTTCTAGCCTCGTCAAGTCCCAAGAAGATTTCGAGAGGGAAGTTAGGAAGTTTGGGAATGTCAGGCACCAAAATCTGGTGACACTCGAAGGCTATTATTGGACTCCGTCACTACAGCTTCTTATATACGAATATGTCTCTGGAGGTAGCTTGTATGGACTGCTACATGAAGCATTGGATGACAATGTCCTGCCATGGAATGAGAGGTTCAACATAATTCTCGGCACAGCAAAAGGACTGGCTCACCTGCATCAATCAAACACTATCCACTATAACATAAAATCCAGCAATATTCTTATTGATTGCAATGGTCAACCTAAGGTGGGAGACTATGGTCTAGCAAGATTGCTGCCAATGTTAGACCGTTATGTTTTAAGCAGCAAGATCCAGAGTGCGCTCGGTTACATGGCACCAGAGTTCGCTTGCAGGACAGTGAAAATAACTGAAAAATGCGACATGTACGCCTTTGGTATCTTGATTCTGGAGATAGTTACAGGAAAGAGGCCTGTCGAGTACATGGAAGACGACGTAGCAGTCCTCTGTGACATGGTCAGGGTAGCAGTGGACGAAGGAAGAGCTGAAGAATGCATCGACAGTAAGCTGAGGGGGAATTTCCCAGCCGCAGAGGCCGTTCCCGTATTGAAATTAGGCTTGATCTGCACCTCCCATGTGCCATCAAACCGACCCGAAATGAGAGAAATGGTCAAGATACTGGAGATGATCAAATGCCCATCAGAATTACAAGAGTTGGGATAA 2757 44.61 MKRLLELIVLFVLAPLCARCLNLSLNDDVLGLIVFKAAVEDPKQNLATWDEDDDSPCNWTGVQCSPRSKRVVELNLDGFSLSGRLGRGLFQLEFLQRLSLSKNNLSGNLSPNFARVDNLQVIDLSGNNLSGTVPDDFFRQCGSLRVVSLANNKFDGKIPDSLSSCGSLIAVNLSSNQFSGPLPSGVLSLSGLRSLDLSDNALVGEIPKVIENLYNLRTLNLRKNQFSSQIPDGIGSCLLLRSIDLSENSFSGNLPQTMQKLVLCSDLILSRNLFEGNIPEWIGEMKSLETLDFSGNNFTGHIPTTMGNLQYLKVLNLSSNAFTDSFPESAMKCQNLLALDISHNFIMGNLPAIGSLAKLQFLNLSGNSFVGPIPETIGDLKALSVLDLSRNRLNESIPKAIGGAVSLMELKLDENFLGGELPSSIGHCSFLTTLFTSHNNLTGPIPAELAKLSYLRNVDLSFNNLNGTLPKQLSNLPNLLLFNISHNDLKGELPGGVFFNTISPSSVAGNPSLCGSVVNKSCPSVLPKPIVLDPNSTSDSISSSLPPSTNLRRNRNILSISALVAIGAAAFIIIGIILITILNSRVQPPTSSLSAAALALSIGDDFSHSSSPDANSGKLVVLSGELDFSAGAHALLNKDCELGCGGFGAVYHTVLRDGHSVAIKKLTVSSLVKSQEDFEREVRKFGNVRHQNLVTLEGYYWTPSLQLLIYEYVSGGSLYGLLHEALDDNVLPWNERFNIILGTAKGLAHLHQSNTIHYNIKSSNILIDCNGQPKVGDYGLARLLPMLDRYVLSSKIQSALGYMAPEFACRTVKITEKCDMYAFGILILEIVTGKRPVEYMEDDVAVLCDMVRVAVDEGRAEECIDSKLRGNFPAAEAVPVLKLGLICTSHVPSNRPEMREMVKILEMIKCPSELQELG 918
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 537599 541277 + CmoCh04G001010.1 Cmo04g00101 379076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00101 918 ProSitePatterns Protein kinases ATP-binding region signature. 642 665 IPR017441 GO:0005524
Cmo04g00101 918 Gene3D Ribonuclease Inhibitor 187 305 IPR032675 -
Cmo04g00101 918 Gene3D Ribonuclease Inhibitor 26 186 IPR032675 -
Cmo04g00101 918 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515
Cmo04g00101 918 Pfam Leucine rich repeat 287 344 IPR001611 GO:0005515
Cmo04g00101 918 Pfam Leucine rich repeat 191 249 IPR001611 GO:0005515
Cmo04g00101 918 Pfam Leucine rich repeat 358 415 IPR001611 GO:0005515
Cmo04g00101 918 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE IRK-RELATED 352 910 - -
Cmo04g00101 918 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE IRK-RELATED 2 352 - -
Cmo04g00101 918 SMART LRR_typ_2 380 404 IPR003591 -
Cmo04g00101 918 SMART LRR_typ_2 189 212 IPR003591 -
Cmo04g00101 918 SMART LRR_typ_2 476 500 IPR003591 -
Cmo04g00101 918 SMART LRR_typ_2 213 237 IPR003591 -
Cmo04g00101 918 SMART LRR_typ_2 116 140 IPR003591 -
Cmo04g00101 918 SMART LRR_typ_2 285 309 IPR003591 -
Cmo04g00101 918 SUPERFAMILY Protein kinase-like (PK-like) 640 906 IPR011009 -
Cmo04g00101 918 Gene3D Phosphorylase Kinase; domain 1 629 712 - -
Cmo04g00101 918 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 352 910 - -
Cmo04g00101 918 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 2 352 - -
Cmo04g00101 918 Pfam Protein tyrosine and serine/threonine kinase 638 905 IPR001245 GO:0004672|GO:0006468
Cmo04g00101 918 PRINTS Leucine-rich repeat signature 119 132 - -
Cmo04g00101 918 PRINTS Leucine-rich repeat signature 380 393 - -
Cmo04g00101 918 SUPERFAMILY RNI-like 73 394 - -
Cmo04g00101 918 ProSiteProfiles Protein kinase domain profile. 636 908 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00101 918 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Cmo04g00101 918 Gene3D Transferase(Phosphotransferase) domain 1 713 916 - -
Cmo04g00101 918 Gene3D Ribonuclease Inhibitor 311 526 IPR032675 -
Cmo04g00101 918 SUPERFAMILY L domain-like 351 514 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00101 Cmo15g00181 CCT
Cmo04g01127 Cmo04g00101 ECH
Cmo04g00101 Cmo15g00181 ECH
Cmo04g00101 Cmo04g01127 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00101 Cmo-Chr4:537599 Cmo15g00181 Cmo-Chr15:831929 0 dispersed
Cmo20g01063 Cmo-Chr20:9811976 Cmo04g00101 Cmo-Chr4:537599 2.58E-06 transposed
Cmo04g00101 Cmo-Chr4:537599 Cmo04g01127 Cmo-Chr4:5753828 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74224 PF07714 PK_Tyr_Ser-Thr 4.30E-40 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00101 - - csv:101217762 1514.21