Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00103 ATGGAAATCCCTGACCCATCCAACCAAATGGCTTCCTCTTCCAATCCCACCGCCCCTATTCGCGGTTCATTCCACCGCCGAGCCCATTCCGAGGTCCATTTCCGGATTCCGAGTGATCTCGATCTCGTCTCGGACCCTTTCGATGGCCCCTCTTCTGGATTTGGAGATCTGGGCTTCGAGGATGATCTATTGTGCACCTTTATGGACATTGAGAAGATCGGATCCAAAATCGACAATGGGTCGTCGTCGAAATCTGAAGGGGCAGACGGCGGCGGTGCTACGGCGGAGAATGTCGATGGGGAGAAAATCTCCCGCCCGAGACACCGTCATAGCAATTCCGCTGATGGGTCTTCCATTATGGAGTCTATTGAGGCTAAGAAGGCCATGGATCCCGATAAACTTGCAGAGTTGTGGACTATTGATCCTAAGCGAGCTAAGAGGATTTTGGCGAATAGACAGTCTGCTGCTCGGTCGAAAGAGAGGAAAGCTCGCTACATAATGGAGCTTGAGAGAAAAGTTCAAAGCCTTCAAACCGAAGCGACAACTCTTTCTGCGCAGCTCACATTGTACCAGAGAGATACCACAGGGCTTTCAACCGAAAACACCGAGCTCAAACTTCGCTTACAAACTATGGAACAGCAAGCGCATTTACGTGACGCTCTTAACGAAGCATTGAAAAAGGAAGTCGAGCGCCTTAAGATTGCGACGGGGGAACTAATGACAGCTACAGATTCATATAACTTCGGAATGCTTCAAGTTTCACATCCCCAATCTTGCTTTCAGCCCCAACCGCAACCCGAACGACACAACCCGCAAAGGACTCAAAGACCCCAAGTTCATCCATTCCATTCTAGTTTACCAAACCCGCATCAAGCTATGTTCGTTGCATCCCACCAACCACACGCCTTGACAGAAATGTTTCAGCAGGATCCTATCAGCCGATTGCAGGGTCTCGATATCGGTAGCCAAGGCGCAGAAATATAG 984 49.9 MEIPDPSNQMASSSNPTAPIRGSFHRRAHSEVHFRIPSDLDLVSDPFDGPSSGFGDLGFEDDLLCTFMDIEKIGSKIDNGSSSKSEGADGGGATAENVDGEKISRPRHRHSNSADGSSIMESIEAKKAMDPDKLAELWTIDPKRAKRILANRQSAARSKERKARYIMELERKVQSLQTEATTLSAQLTLYQRDTTGLSTENTELKLRLQTMEQQAHLRDALNEALKKEVERLKIATGELMTATDSYNFGMLQVSHPQSCFQPQPQPERHNPQRTQRPQVHPFHSSLPNPHQAMFVASHQPHALTEMFQQDPISRLQGLDIGSQGAEI 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 550396 553785 + CmoCh04G001030.1 Cmo04g00103 379078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00103 327 Coils Coil 218 238 - -
Cmo04g00103 327 MobiDBLite consensus disorder prediction 1 20 - -
Cmo04g00103 327 MobiDBLite consensus disorder prediction 100 114 - -
Cmo04g00103 327 CDD bZIP_plant_RF2 144 193 IPR044759 GO:0003700|GO:0006355
Cmo04g00103 327 Gene3D - 142 193 - -
Cmo04g00103 327 PANTHER BZIP TRANSCRIPTION FACTOR 18 7 324 - -
Cmo04g00103 327 MobiDBLite consensus disorder prediction 75 118 - -
Cmo04g00103 327 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 324 - -
Cmo04g00103 327 SUPERFAMILY Leucine zipper domain 143 194 IPR046347 GO:0003700|GO:0006355
Cmo04g00103 327 Coils Coil 159 186 - -
Cmo04g00103 327 MobiDBLite consensus disorder prediction 256 285 - -
Cmo04g00103 327 Pfam bZIP transcription factor 143 198 IPR004827 GO:0003700|GO:0006355
Cmo04g00103 327 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 141 204 IPR004827 GO:0003700|GO:0006355
Cmo04g00103 327 MobiDBLite consensus disorder prediction 1 22 - -
Cmo04g00103 327 MobiDBLite consensus disorder prediction 256 287 - -
Cmo04g00103 327 SMART brlzneu 139 203 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00697 Cmo-Chr2:4402783 Cmo04g00103 Cmo-Chr4:550396 1.03E-78 dispersed
Cmo04g00103 Cmo-Chr4:550396 Cmo20g00333 Cmo-Chr20:1631748 1.99E-111 dispersed
Cmo04g00103 Cmo-Chr4:550396 Cmo04g01130 Cmo-Chr4:5771503 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9503 PF00170 bZIP_1 1.70E-08 CL0018 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00103 - - csv:101209388 569.311