Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00104 ATGCAAGCCTCTTTGTTTCTTGAATATCACACACATGGCCTGTTTCCTCTTTTCTCTATAAATCTCCCCTTCTTCCCTTCTTCTCTTCTATACCCACAAACCCTCATGGCTTCCTCTTCCTCTTCTTCACCATTTCCCTCTCTTCTTCTCCTTCCTTTCTTCCTCTTCCACATCTTTTTTCCCTCTGCCTCCGCCGACTACGGCGGCTGGGAGAGCGGCCATGCCACCTTCTACGGCGGCGGAGACGCCTCCGGTACTATGGGTGGAGCATGTGGGTATGGAAACTTGTACAGCCAAGGGTACGGCACCAACACTGTGGCACTAAGCACAGCGCTATTCAACAACGGCCTTAGCTGCGGCGCATGCTACGAAATGACTTGCACAAATGACCCTAAATGGTGCCTACCCGGCACCATCAAGGTCACTGCCACCAACTTCTGCCCCCCCAATTTCGCCCTCCCCAATAACAACGGCGGCTGGTGCAACCCTCCCCTCCAGCACTTCGACATGGCCGAGCCCGCCTTCCTCCAGATCGCTCAGTACCGCGCCGGAATCGTTCCCGTCTCTTTTCGAAGGAACGGCGGACGTAACAAGCACGGTCGTGGACACGTTAAGTTCATCCGCTGCTCCAACTGCGGCAAGTGCTGCCCCAAGGACAAGGCGATTAAGAGATTTCTTGTGAGGAATATTGTTGAGCAGGCTGCTGTGAGGGATGTCCAAGAAGCCTGTGTCTATGATCAATACACTCTCCCAAAGCTTTATGCCAAGATGCAATACTGTGTTTCCTGTGCTATTCACTCACATGTTGTGAGAGTTCGATCTCGTACTGACAGAAGGAATCGGCAACCACCACAGCGCTTCCTCAGACGCAGGGATGATCAGCCAAAGCCAGGTCAGCCAGGTCAGCCAGGCCAAGCACCTCGTCCTGTTGGAGCTGGAAATCCTGCTCGTGTGTAA 957 53.5 MQASLFLEYHTHGLFPLFSINLPFFPSSLLYPQTLMASSSSSSPFPSLLLLPFFLFHIFFPSASADYGGWESGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTVALSTALFNNGLSCGACYEMTCTNDPKWCLPGTIKVTATNFCPPNFALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVSFRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPKPGQPGQPGQAPRPVGAGNPARV 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 556235 560356 + CmoCh04G001040.1 Cmo04g00104 379079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00104 318 Gene3D - 60 190 IPR036908 -
Cmo04g00104 318 MobiDBLite consensus disorder prediction 276 296 - -
Cmo04g00104 318 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 88 200 IPR007112 -
Cmo04g00104 318 PANTHER EXPANSIN-A15 45 200 IPR002963 GO:0009664
Cmo04g00104 318 PRINTS Expansin signature 175 188 IPR002963 GO:0009664
Cmo04g00104 318 PRINTS Expansin signature 100 114 IPR002963 GO:0009664
Cmo04g00104 318 PRINTS Expansin signature 127 138 IPR002963 GO:0009664
Cmo04g00104 318 PRINTS Expansin signature 139 149 IPR002963 GO:0009664
Cmo04g00104 318 PRINTS Expansin signature 158 175 IPR002963 GO:0009664
Cmo04g00104 318 MobiDBLite consensus disorder prediction 273 318 - -
Cmo04g00104 318 Pfam Lytic transglycolase 105 190 IPR009009 -
Cmo04g00104 318 Gene3D Ribosomal protein S26e 191 300 IPR038551 -
Cmo04g00104 318 PANTHER EXPANSIN 45 200 - -
Cmo04g00104 318 ProSitePatterns Ribosomal protein S26e signature. 259 266 IPR000892 GO:0003735|GO:0005840|GO:0006412
Cmo04g00104 318 SUPERFAMILY Barwin-like endoglucanases 69 192 IPR036908 -
Cmo04g00104 318 PRINTS Expansin/Lol pI family signature 87 105 IPR007118 GO:0005576
Cmo04g00104 318 PRINTS Expansin/Lol pI family signature 183 199 IPR007118 GO:0005576
Cmo04g00104 318 PRINTS Expansin/Lol pI family signature 69 84 IPR007118 GO:0005576
Cmo04g00104 318 PRINTS Expansin/Lol pI family signature 109 127 IPR007118 GO:0005576
Cmo04g00104 318 Pfam Ribosomal protein S26e 191 292 IPR000892 GO:0003735|GO:0005840|GO:0006412
Cmo04g00104 318 SMART dpbb_1 105 190 IPR007112 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00104 Cmo04g02996 CCT
Cmo04g00104 Cmo15g00176 CCT
Cmo04g00104 Cmo15g00176 ECH
Cmo04g02996 Cmo04g00104 ECH
Cmo04g00104 Cmo04g02996 ECH
Cmo04g01134 Cmo04g00104 ECH
Cmo04g00104 Cmo04g01134 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00104 Cmo-Chr4:556235 Cmo15g00178 Cmo-Chr15:811890 2.25E-85 dispersed
Cmo04g00104 Cmo-Chr4:556235 Cmo04g01132 Cmo-Chr4:5778098 1.18E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00104 - - csv:101209633 275.789