Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00110 ATGTTCAAATTAGTTGTCACAGATGGAGAAAGATCGGAGGTGTTAGGGAAGAAGAGAAAGCGAGCGGTATCATCAAATATTCCTCCACGACACACGCTGCACGGTCCTCCTAGGACTCTCAACACCATTACTCCATGTGCAGCCTGCAAGCTCCTAAGAAGAAGATGTGGTCAACAATGTCCCTTCGCCCCATACTTCTCCCCCCACGAGCCTCACAAGTTCGCCTCGGTCCACAAGGTCTTCGGCGCCAGCAATGTCTCCAAGATGCTCAAGGAAGTTCCGAAAAATGAAAGAGATAATACTACGAATAGTCTAATTTACGAAGCTAACGTGAGGCTGAGAGATCCTGTGTATGGTTGCATGGGCGCCATTTCATGTCTACAACACCAAGTCCAAGCGTTACAAGCTACACTCACTGCAGTTAGAGCTGAGATACTGAGATGCAAATATAGACAAGGTAATATGGTTTCCATTGCCGTACAGCCACCGCCACCGCCGCCTCCCGAGCTACCTCCGCCGCCTCATCAGGATGCTTCTTCCTCTTCCTCCACCTTGTACAACCGGCCCACGGTGGCTGCTGATTCATCCTTTTTCGCATTTTAG 603 49.75 MFKLVVTDGERSEVLGKKRKRAVSSNIPPRHTLHGPPRTLNTITPCAACKLLRRRCGQQCPFAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTTNSLIYEANVRLRDPVYGCMGAISCLQHQVQALQATLTAVRAEILRCKYRQGNMVSIAVQPPPPPPPELPPPPHQDASSSSSTLYNRPTVAADSSFFAF 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 579883 580558 - CmoCh04G001100.1 Cmo04g00110 379085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00110 200 MobiDBLite consensus disorder prediction 157 187 - -
Cmo04g00110 200 Pfam Lateral organ boundaries (LOB) domain 45 141 IPR004883 -
Cmo04g00110 200 Coils Coil 124 144 - -
Cmo04g00110 200 PANTHER LOB DOMAIN-CONTAINING PROTEIN 15 31 191 - -
Cmo04g00110 200 MobiDBLite consensus disorder prediction 159 175 - -
Cmo04g00110 200 ProSiteProfiles LOB domain profile. 44 145 IPR004883 -
Cmo04g00110 200 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 31 191 - -
Cmo04g00110 200 MobiDBLite consensus disorder prediction 16 36 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00110 Cmo-Chr4:579883 Cmo15g00170 Cmo-Chr15:784533 4.68E-65 dispersed
Cmo04g00110 Cmo-Chr4:579883 Cmo04g01140 Cmo-Chr4:5821060 5.51E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9504 PF03195 LOB 3.50E-39 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00110 - - cmax:111485427 358.992