Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00119 ATGGATGAAATCCAAACCCCATTTGATTCCAACTCTTGTTGGAAATACCCACTTGGAGATTTTGGGGTTTTGTTGACGAAAACTGCCGATTGGCTCTGTTTTCCAGGGAAGAAGGAGAAGAAACGGAGGTTTTCGAGGAAAACCCCCCATGGGTTTGTTTCTTCTCTTCATTTTGGATTAGTTTTGTCCTTCTTGGTGGTCAGTTTTGTCTGTGTTCAGCCTGTTTTGAGCCAGGATTGGGACGGCGTGGTTGTGACTCAAGCTGATTTTCAATCCCTTCAGGCATTCAAGCAAGAACTTGATGATCCTAAAGGGTTCTTGAAGAGTTGGAATGATAGTGGATTTGGGGCTTGTTCTGGTGGTTGGGTTGGGATTAAATGCGCTAAGGGACAGGTTATTGTGATACAGCTTCCATGGAAGGGATTAGGAGGTCGAATCACTGAGAAGATTGGCCAACTTCAGGCCCTTAGGAAGCTCAGTTTACATGACAACTTCATTGCTGGATCCATCCCTTCTTCATTGGGTCTTCTTCCAAATCTTAGAGGGGTTCAGTTGTTCAACAATCGATTTTCGGGTTCAATCCCGCCTTCATTGGGGCGTTGTCCTCTGCTTCAAACTCTTCACATTAGTAACAATTTGCTCACCGGAACAATCCCATCTAGTTTGGCTAACTCCACCAAACTCTATTGGCTTAACTTGAGCCATAACTCGTTTTCCGGTCCAATCCCGACGAGTCTCACTCGATCGGTGTCCCTTACTTTCCTCGCTCTTCAACACAACAATCTCTCAGGTAGCATTCCCGACTCGTGGGGAAGCGATGCCACCGAGCGAAACCGGGTGTTTCAGCTCAAGTCTTTGACTCTTGATGACAACCTCCTCTCAGGTACCATACCAACTTCTTTAAGCAAGTTAAGTAAGGTTCAAGTGGTTTCCCTTGGCCACAATAGGCTAAATGGTGGCCTTCCTGATGAACTTAGTAGGCTTTCTTTGCTCAAAACTTTGGATGTTTCTAATAATTTCCTTAATGGAAGCATACCCCAAAGTTTTGATAGATTCAGAAATCTGTCTGTTCTCAACTTGAGTAGAAACAGATTCAATGGTCATATACCTTCAACTTTAGGGAACATCTCAACACTTACTCAACTTGATCTATCTCAGAACAATCTAAGTGGAGAAATCCCAGCTTCTCTTGCTGATTTGCAAGCTCTTCAATCCTTAAACGTCTCGTATAACAACCTTTCGGGTTCGGTACCGGTGGCCCTTGCCGAAAAATTCAATGCGAGTTCCTTTGTTGGGAACATTCAGCTCTGTGGGTTCAGTGGTGCGATTCAGTGCCTGTCCCCTGCCCCTTCTCAAGAAGTTCCTGCTCCTCCGCTGGAAAGTTCGACATCCCGACATCGGAAGTTAAGTACTAAAGATATAATCCTCATAGCAGCAGGATCCCTCCTTGTAGTATTGGTTATAGTTTTCTTTGTACTGCTGTGCTGCTTGATAAGGAAAAGAGCTGCTTCGAAAGAAAAGGATGGCGGTGAGGCTGCAGCAGCCGGGGCTGTGAGGACCGAGAAGGGCGTCCCTCCGACGGGCAGTGAAGTTGAAGCGGGAGGGGATGCTGGAGGAAAGCTCGTCCATTTCGAGGGGCAAACGGTGTTCACAGCTGATGATCTTTTGTGTGCAACAGCAGAAATAATGGGAAAGAGTACTTACGGGACTGTTTACAAGGCTACATTGGAGGATGGAAGTCAAGTTGCAGTAAAGAGATTGAGAGAGAAGATCACTAAGAGCCAGAAGGAATTTGAAGCAGAGGTCAATATACTTGGAAAGATCAGGCATCCAAATCTTCTAGCTTTGAGAGCTTATTACTTGGGACCTAAAGGAGAAAAGCTTCTTGTTTTCGATTACATGCCGAACGGGAGCCTCGCAACGTTCCTGCACGCTCGTGGACCGGATACATTCATCGATTGGCCGACGAGGATGAAGATAGCTCAGGGTATGACTCGTGGCCTGTGTCACCTTCACGCACACGAGAACAGCATCCATGGAAACCTAACATCCAGCAACATTCTACTTGATGAGTACATAAATGCTAAGATCGCAGATTTTGGCCTGTCAAGGTTGATGACTGCCGCTGCAAGCTCAAATGTGATAGCAACGGCAGGGGCACTTGGGTACCGAGCGCCCGAGCTCTCAAAGCTGAAGAAAGCAAATACAAAAACTGACATTTACAGCCTTGGAGTGATCATATTGGAACTCCTGACTGGAAAGTCCCCCGGTGAAGCCATGAATGGAGTCGATTTGCCGCAATGGGTTGCATCAATTGTTAAAGAGGAGTGGACTAATGAAGTTTTCGATATGGAACTGATGAGGGATGCCTCTACCATTGGAGATGAGTTGCTGAACACGCTAAAACTCGCTTTGCATTGTGTCGATCCATCACCGTCGGCAAGACCAGAAGTTCAACAAGTTCTACAACAACTGGAGGAGATTAGGCCAGAAACTGCTCCCAGTTCTGGGGACGACGGAGCTGGAGGAGGAGGAGGGCCCCCTTCAACAAGTGAGTGA 2559 46.62 MDEIQTPFDSNSCWKYPLGDFGVLLTKTADWLCFPGKKEKKRRFSRKTPHGFVSSLHFGLVLSFLVVSFVCVQPVLSQDWDGVVVTQADFQSLQAFKQELDDPKGFLKSWNDSGFGACSGGWVGIKCAKGQVIVIQLPWKGLGGRITEKIGQLQALRKLSLHDNFIAGSIPSSLGLLPNLRGVQLFNNRFSGSIPPSLGRCPLLQTLHISNNLLTGTIPSSLANSTKLYWLNLSHNSFSGPIPTSLTRSVSLTFLALQHNNLSGSIPDSWGSDATERNRVFQLKSLTLDDNLLSGTIPTSLSKLSKVQVVSLGHNRLNGGLPDELSRLSLLKTLDVSNNFLNGSIPQSFDRFRNLSVLNLSRNRFNGHIPSTLGNISTLTQLDLSQNNLSGEIPASLADLQALQSLNVSYNNLSGSVPVALAEKFNASSFVGNIQLCGFSGAIQCLSPAPSQEVPAPPLESSTSRHRKLSTKDIILIAAGSLLVVLVIVFFVLLCCLIRKRAASKEKDGGEAAAAGAVRTEKGVPPTGSEVEAGGDAGGKLVHFEGQTVFTADDLLCATAEIMGKSTYGTVYKATLEDGSQVAVKRLREKITKSQKEFEAEVNILGKIRHPNLLALRAYYLGPKGEKLLVFDYMPNGSLATFLHARGPDTFIDWPTRMKIAQGMTRGLCHLHAHENSIHGNLTSSNILLDEYINAKIADFGLSRLMTAAASSNVIATAGALGYRAPELSKLKKANTKTDIYSLGVIILELLTGKSPGEAMNGVDLPQWVASIVKEEWTNEVFDMELMRDASTIGDELLNTLKLALHCVDPSPSARPEVQQVLQQLEEIRPETAPSSGDDGAGGGGGPPSTSE 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 620315 623381 + CmoCh04G001190.1 Cmo04g00119 379094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00119 852 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 48 837 - -
Cmo04g00119 852 MobiDBLite consensus disorder prediction 828 852 - -
Cmo04g00119 852 Pfam Leucine rich repeat N-terminal domain 88 127 IPR013210 -
Cmo04g00119 852 Gene3D Ribonuclease Inhibitor 280 446 IPR032675 -
Cmo04g00119 852 Pfam Protein tyrosine and serine/threonine kinase 560 825 IPR001245 GO:0004672|GO:0006468
Cmo04g00119 852 Gene3D Phosphorylase Kinase; domain 1 563 634 - -
Cmo04g00119 852 SUPERFAMILY Protein kinase-like (PK-like) 561 829 IPR011009 -
Cmo04g00119 852 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 48 837 - -
Cmo04g00119 852 Pfam Leucine rich repeat 282 339 IPR001611 GO:0005515
Cmo04g00119 852 Pfam Leucine rich repeat 203 262 IPR001611 GO:0005515
Cmo04g00119 852 Pfam Leucine rich repeat 353 413 IPR001611 GO:0005515
Cmo04g00119 852 Gene3D Ribonuclease Inhibitor 201 279 IPR032675 -
Cmo04g00119 852 SUPERFAMILY L domain-like 126 421 - -
Cmo04g00119 852 Gene3D Ribonuclease Inhibitor 88 200 IPR032675 -
Cmo04g00119 852 CDD STKc_IRAK 563 828 - -
Cmo04g00119 852 Gene3D Transferase(Phosphotransferase) domain 1 635 838 - -
Cmo04g00119 852 MobiDBLite consensus disorder prediction 509 536 - -
Cmo04g00119 852 ProSiteProfiles Protein kinase domain profile. 557 828 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01155 Cmo04g00119 ECH
Cmo04g00119 Cmo04g01155 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00119 Cmo-Chr4:620315 Cmo14g00037 Cmo-Chr14:184002 0 dispersed
Cmo17g01218 Cmo-Chr17:9719525 Cmo04g00119 Cmo-Chr4:620315 2.77E-15 dispersed
Cmo19g00003 Cmo-Chr19:31751 Cmo04g00119 Cmo-Chr4:620315 2.46E-09 dispersed
Cmo04g00119 Cmo-Chr4:620315 Cmo04g01155 Cmo-Chr4:5892448 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74225 PF07714 PK_Tyr_Ser-Thr 9.20E-41 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00119 - - csv:101214895 1375.15