Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00122 ATGGTTAAAAGACGTTTATATGAATTCAAGCATCCATTCAATGATTACCCTTTCGAGGCGATGTGCTGTGGTTCTTGGCAAGCTGCGGAGAAGATAAGAATTAGGAATGGTTCAATCACCCTTCATTTAGTGAATGATCAGTTCATGATTCTGGAAAGAGGTCCTTACACAGACTTCCGCATTAGGTCGAGACAAGCGACTTCATCTGACTGCACCTGTTTTCTACGACCTGGTGTTGATATTTGTGTCCTCTCTTCCTCTCGCAGCACGGAAAATACTGATGTGCAAGGTTCAGAGCCTGTGTGGATCGATGCTAAAATAAGCTCAATTGAGCGGAAGCCTCATGATTCTGGGTGTTCATGCCAGTTTTATGTCCAATTATATGCTGCTGATAAAAAACCCCTTGGTTCAGAGAAGGGATCGCTTTGTAAAGAAATCATAGCAATGGGAATTGATCAGATCTTTGTTCTCCAAAAGGTTAGGAAACACTTCTGTGAAGATCAACACTACCGATGGGATTTCTCTGAGGACTGCGCTCTGTTGCCAAAAACAAAACTGCTTCTGGGAAAATTTCTGTCCGATCTTTCTTGGTTAGTAGTAACATCAGCATTGAAACATGTCACTTTTGATGTAAGATCAGTGGATAACAAGATCTTGTACCAAGTGTTGGAAAGTAATCAGAAGGGCACTTCAGTAGCTTCTGACAAGATTTTATACGTTGTAAACTTTAGAAATGATGACGGTATGTTTATTCCAATAATACATCAGCTAAATTCATCTGATAGGATTGAGATGTCTCCTGCAGATGATGCATTTGACAGTCAATTGCACTCATTTACTGATCTTATGGACTTGAGGCGTTCAAAACGCCGTAATGTCCAACCTGATCGTTTTCTTGGCTGTGATAGTATCAATGAATCAGAAATTGACTACAGCGGAACCAGGATATATAAAACAGAGCAATTGAATGATGATGATGAGATGACATTACCACTTGCTTACCTGTTTGCCACGAATGCAGGTCCTTCAAAAGTAAAGACGGAAAACGAAAGCAACAATCATTTCAATCAATTGAGTGTACATGATGATCTCTCTGATTTCAAGAGCAGACTAAGATCATTGGAAATGAGTGATGAAGTTGAAGATAAAAATCAACTTGCTATAGTTCCTGTAATTGATGAACAGCCAATAGCATCTGATCCATATCCTGATGATGCCAATGGTTGTGGTAACTTTACGAAACAGATAACTGAAATGTCAGCTAGGTATTACTACATTAACAATAAACGCAAAGTCCGGAAAAGAAACTTTTCAGACTTTGGAGACGAGAACTTTGAGAATTGTAGCTGGGGAAAGGCTTCGAGTAGTAAAGGTAGGAAGACCAGGTATCATTCCATATGTTATAAAGAGGATGGTTCTCCCAAAGAAAGAACTTGGCAGAAACGGTCCTTAGGTGCAGGTGCATACAAGGATTTGATCAATTCCTTCCTGAAGAATATTGACTCAACAATTCAAAAAGAAGAGCCACAGATAATTGATCAATGGAAAGAATTTAAGAACAAAACTTCCTTGGATAAGAGGAACGAGATGGAACTGCCCTCTAATGAGGAGAAGGAAGAGAACTCTGAGATTGAAATGCTGTGGAGAGAAATGGAAATATCCCTTGCCTCAAGTTACCTTATTGATGCTAACCAGGGTTTTAGTAATGGAACATCAGTGGAGCCTGAACAGAAAGAAAGCAAATGGTGCCAGCATGAGTTCAAGTTGAATGAAGAGATAGGGATGCTCTGCCATATATGTGGCTTTGTGAGCACTGAAATTAAAGATGTCTCAGCACCATTTATGCAACACATGAGCTGGAATTCCGAAGAGCGGAGGATTGAAGAAAAAGATGAGCACAATACTGACGATGAGGAGGAGATGAATATTTTCTGTGGCCTGCCTTCTTCTGATGGTACCTTCTCGGAAGAAAATGACAATGTCTGGGCCTTGATCCCTGAATTCAGAAGGAAATTACATCTCCACCAAAAGAAAGCATTCGAGTTCCTGTGGAAAAATGTTGCTGGTTCTATGGTTCCAGCTCTCATGGATCAATCATCTCGTAAAATAGGTGGTTGTGTGATATCCCATACACCAGGAGCTGGAAAAACCTTTCTGATCATCTCATTCCTCGTTAGTTACTTGAAACTGTTTCCAGGGAAAAGGCCCCTTGTCCTTGCTCCAAAGACAACTCTTTATACATGGTATAAGGAATTTATTAAGTGGGAAGTTCCAGTACCAATTCATCTAATACATGGTCGTAGAACGTACCGAGTTTTCCGGTCGAACTCAAAACCAGTCACGTTTGCTGGAGGTCCAAGGCCGACAGACGATGTCATGCACATCTTGGATTGCCTGGAAAAGATAAAGAAGTGGCATGCACATCCAAGTGTTCTTGTTATGGGCTATACATCATTTCTTACATTAATGAGGGAAGATGCAAAATTTGCTCACAGAAAGTACATGGCCAAAGTTTTGCGCCAAAGCCCCGGTATCTTAATATTGGATGAGGGGCACAACCCCAGGAGTACTAAGTCCAGGCTGAGGAAGGTTTTGATGAAAGTTGAAACAGACCTCAGAATACTCCTCTCAGGTACCTTGTTTCAAAATAATTTCTGTGAATATTTCAATACTCTTTGTTTGGCAAGACCTAGGTTTGTGAATGAAGTGTTGAAGAAACTAGATCCCAAATTCAAGAGGAAGAAAAGAAAAGCTCCACACTTGCAAGAAGCTCGGGCAAGGAAATTCTTTTTAGATAAGATAGCTCGGAAAATCGATGCAGGTGATGGAGAAGAGAGGCAGGAAGGTCTGAACATGCTAAGAAATATGACAAGTGCGTTTATTGATGTTTATGAAGGTGGAAGTAAGGATGGCCTTCCTGGTTTACAAATTTACACCTTACTAATGAACACAACTGACATACAGCAACAAATTTTGAATAAACTTCATAAGATAATGGCTAAATACCCTGGATATCCCCTTGAGTTAGAGCTCCTCATAACTCTTGGTTCAATCCATCCTTGGTTAGTAAAAACTGCGGTTTGTGCTAGCAAATTTTTCAGTGAGAGGGATCTGATGGAACTAGAAGGATACAAATTTGATTTGAGGAAAGGTTCAAAGGTGATGTTTGTTCTGAATCTTGTGTACCGTGTCGTCAAGAAGGAAAAAATTCTAATCTTCTGCCACAACATTGCACCCGTCAAACTATTCATAGAGCTGTTTGAGAACGTATTTAGGTGGAAGAGAGGCCGAGAAATCTTGGCCCTCACAGGGGACCTTGAGCTATTCGAACGAGGAAAAGTGATGGATAAGTTTGAAGATCCCTTAGGGCCATCCAAAGTCTTGCTTGCTTCAATTACTGCTTGCGCAGAAGGCATTAGTTTGACTGCAGCTTCACGAGTCATCTTACTAGACTCCGAGTGGAATCCTTCGAAGACAAAGCAGGCCATCGCTCGAGCTTTCCGTCCAGGCCAGCTTAAGGTGGTCTATGTCTATCAACTACTGGTAACTGGCACATTGGAAGAGGACAAGCACAAGAGAACTACATGGAAGGAATGGGTGTCAAGTATGATTTTCAGTGAGGCGTTTGTGGAGGATCCTTCTAAATGGCAAGCAGAAAAGATTGAAGATGAAGTTCTTAGGGAGATGGTGGAGGAAGATAGAGTCAAATCGTTTCATATGATTATGAAAAACGAGAAGGCTTCTACTGTGATCAGAGAAAAGGATTAG 3768 40.9 MVKRRLYEFKHPFNDYPFEAMCCGSWQAAEKIRIRNGSITLHLVNDQFMILERGPYTDFRIRSRQATSSDCTCFLRPGVDICVLSSSRSTENTDVQGSEPVWIDAKISSIERKPHDSGCSCQFYVQLYAADKKPLGSEKGSLCKEIIAMGIDQIFVLQKVRKHFCEDQHYRWDFSEDCALLPKTKLLLGKFLSDLSWLVVTSALKHVTFDVRSVDNKILYQVLESNQKGTSVASDKILYVVNFRNDDGMFIPIIHQLNSSDRIEMSPADDAFDSQLHSFTDLMDLRRSKRRNVQPDRFLGCDSINESEIDYSGTRIYKTEQLNDDDEMTLPLAYLFATNAGPSKVKTENESNNHFNQLSVHDDLSDFKSRLRSLEMSDEVEDKNQLAIVPVIDEQPIASDPYPDDANGCGNFTKQITEMSARYYYINNKRKVRKRNFSDFGDENFENCSWGKASSSKGRKTRYHSICYKEDGSPKERTWQKRSLGAGAYKDLINSFLKNIDSTIQKEEPQIIDQWKEFKNKTSLDKRNEMELPSNEEKEENSEIEMLWREMEISLASSYLIDANQGFSNGTSVEPEQKESKWCQHEFKLNEEIGMLCHICGFVSTEIKDVSAPFMQHMSWNSEERRIEEKDEHNTDDEEEMNIFCGLPSSDGTFSEENDNVWALIPEFRRKLHLHQKKAFEFLWKNVAGSMVPALMDQSSRKIGGCVISHTPGAGKTFLIISFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEVPVPIHLIHGRRTYRVFRSNSKPVTFAGGPRPTDDVMHILDCLEKIKKWHAHPSVLVMGYTSFLTLMREDAKFAHRKYMAKVLRQSPGILILDEGHNPRSTKSRLRKVLMKVETDLRILLSGTLFQNNFCEYFNTLCLARPRFVNEVLKKLDPKFKRKKRKAPHLQEARARKFFLDKIARKIDAGDGEERQEGLNMLRNMTSAFIDVYEGGSKDGLPGLQIYTLLMNTTDIQQQILNKLHKIMAKYPGYPLELELLITLGSIHPWLVKTAVCASKFFSERDLMELEGYKFDLRKGSKVMFVLNLVYRVVKKEKILIFCHNIAPVKLFIELFENVFRWKRGREILALTGDLELFERGKVMDKFEDPLGPSKVLLASITACAEGISLTAASRVILLDSEWNPSKTKQAIARAFRPGQLKVVYVYQLLVTGTLEEDKHKRTTWKEWVSSMIFSEAFVEDPSKWQAEKIEDEVLREMVEEDRVKSFHMIMKNEKASTVIREKD 1255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 629061 634561 + CmoCh04G001220.1 Cmo04g00122 379097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00122 1255 CDD SF2_C_SNF 1052 1181 - -
Cmo04g00122 1255 Gene3D - 1027 1245 IPR027417 -
Cmo04g00122 1255 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 17 1249 - -
Cmo04g00122 1255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 971 1231 IPR027417 -
Cmo04g00122 1255 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1057 1241 IPR001650 -
Cmo04g00122 1255 Pfam Helicase conserved C-terminal domain 1053 1169 IPR001650 -
Cmo04g00122 1255 SMART helicmild6 1085 1170 IPR001650 -
Cmo04g00122 1255 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 17 1249 IPR044567 GO:0080188
Cmo04g00122 1255 Pfam SNF2-related domain 672 955 IPR000330 GO:0005524|GO:0140658
Cmo04g00122 1255 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 697 898 IPR014001 -
Cmo04g00122 1255 SMART ultradead3 668 903 IPR014001 -
Cmo04g00122 1255 CDD DEXHc_ATRX-like 672 937 - -
Cmo04g00122 1255 Gene3D - 650 937 IPR038718 -
Cmo04g00122 1255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 658 900 IPR027417 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00122 Cmo15g00160 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00122 Cmo-Chr4:629061 Cmo20g00835 Cmo-Chr20:4162691 4.26E-78 dispersed
Cmo04g00122 Cmo-Chr4:629061 Cmo02g01621 Cmo-Chr2:9341993 1.78E-102 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9505 PF00176 SNF2_N 4.40E-17 CL0023 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00122 K10875 - csv:101215377 2199.09