Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00129 ATGGGTGGCGGTTCGCCCTGCGCGTCGTGCAAACTCCTCCGGCGACGGTGCGCAAAAGAGTGCATTTTTGCCCCTTACTTCCCCTCCGATGACCCCCACAAATTTGCTATTGTTCATAAGGTTTTTGGTGCCAGCAATGTCAGCAAAATGTTGCAGGAACTGCCGGTGCAACAGAGAGGCGACGCCGTGATGAGCCTAGTTTATGAGGCAACTGCAAGAGTGCGGGACCCAGTTTATGGTTGTGTAGGGGCAATTTCGTACTTACAAAACCAAGTTTCTCAGCTACAAATGCAATTAGCTGTTGCTCAATCTGAGATACTTTGCTTCCAAATGCAACAAGACCACCTTGTTTTCCCAAATTGCCCTCAGATCTACTCCGACGAGAAACCGCCGTCTCTTCTACTCCCGCCGCCGTCTCCTCCGCGGTCTCAGTGCTTCAACTTTGCTTCCTCTCCGAATATAATCTACGACGCCATTTTTGGACATGACATTGTTTCTTAA 501 49.7 MGGGSPCASCKLLRRRCAKECIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVMSLVYEATARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQSEILCFQMQQDHLVFPNCPQIYSDEKPPSLLLPPPSPPRSQCFNFASSPNIIYDAIFGHDIVS 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 659700 660200 - CmoCh04G001290.1 Cmo04g00129 379104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00129 166 Coils Coil 85 105 - -
Cmo04g00129 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 2 116 - -
Cmo04g00129 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 116 - -
Cmo04g00129 166 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Cmo04g00129 166 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01166 Cmo04g00129 ECH
Cmo04g00129 Cmo04g01166 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00726 Cmo-Chr2:4587924 Cmo04g00129 Cmo-Chr4:659700 6.60E-67 dispersed
Cmo04g00129 Cmo-Chr4:659700 Cmo20g00354 Cmo-Chr20:1742608 4.31E-57 dispersed
Cmo13g00481 Cmo-Chr13:5814170 Cmo04g00129 Cmo-Chr4:659700 1.26E-59 transposed
Cmo11g02055 Cmo-Chr11:13918212 Cmo04g00129 Cmo-Chr4:659700 3.08E-55 transposed
Cmo04g00129 Cmo-Chr4:659700 Cmo04g01166 Cmo-Chr4:5949123 4.55E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9506 PF03195 LOB 4.30E-42 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00129 - - csv:101204801 302.367