Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00133 ATGGCTTCCCATTCCCCTAATCTCGAGTGTCGGATGTACGAAGCCAAGTACCCTGAGGTCGACATGGCCGTCATGATCCAGGTCAAGAACATTGCTGACATGGGCGCTTACGTCTCTCTTCTTGAGTACAACAACATCGAGGGTATGATTCTCTTCTCCGAGCTCTCTCGCCGTCGTATTCGTAGTGTCAGCAGCTTAATTAGGGTCGGTCGAATCGAGCCCGTCATGGTCCTCAGGGTCGATAAGGAGAAGGGGTATATTGATTTGAGTAAGAGGAGGGTTTCTGAGGAGGATATTCAGGCATGTGAGGAGAGGTATAACAAGAGCAAGCTTGTTCACTCTATAATGCGCCATGTTGCTGAGACTGAAAATATTGATTTGGAGGACTTGTATATCCATGTTGGCTGGCCACTATACCGGAAATATGGTCATGCTTTTGAGGCATTCAAGGTTATTGTAACTGATCCTGATACAGTGTTGAATTCTCTCACCCGTGAAGTCAAGGAAGCTGGTCCTGATGGGCAAGAGGTAACTAAGGTAGTTCCCGCAATGTCTGAGGATGTAAAAGATGCGCTCATAAAAAATATTAGAAGAAGAATGACTCCTCAACCCCTGAAGGTTCGGGCTGATATTGAGATGAAGTGTTTCCAGTTTGATGGTGTTCTTCACATTAAGGAAGCAATGCGGAAAGCTGAGGCTGCTGGGAATGATGATTGTCCTGTTAAGATTAAATTGGTTGCTCCTCCACTCTATGTTCTTACGACCCAGACACTTGACAAGGAGCAAGGAATCACTGTTCTTGAAAAAGCAATCACTGCCTGCACGGAGGCAATCGAGCATCACAAGGGAAAGCTTGTAGTGAAGGAGGCACCTAGAGCGGTGAGTGAAAGAGACGACAAATTACTTGCTGAGCACATGGCGAAGCTACGACAAGACAACGAAGAGATCAGTGGCGATGAGGATAGTGAGGAAGAGGAAGACACTGGAATGGGAGAAGTCGATGTCGAAAATGCAGGTTCTGGGATCACCGAGTAA 1035 46.67 MASHSPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIRVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETENIDLEDLYIHVGWPLYRKYGHAFEAFKVIVTDPDTVLNSLTREVKEAGPDGQEVTKVVPAMSEDVKDALIKNIRRRMTPQPLKVRADIEMKCFQFDGVLHIKEAMRKAEAAGNDDCPVKIKLVAPPLYVLTTQTLDKEQGITVLEKAITACTEAIEHHKGKLVVKEAPRAVSERDDKLLAEHMAKLRQDNEEISGDEDSEEEEDTGMGEVDVENAGSGITE 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 676530 680189 + CmoCh04G001330.1 Cmo04g00133 379108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00133 344 Gene3D EIF_2_alpha 205 327 IPR024055 -
Cmo04g00133 344 PANTHER BNAC04G04870D PROTEIN 5 344 - -
Cmo04g00133 344 MobiDBLite consensus disorder prediction 309 344 - -
Cmo04g00133 344 Pfam S1 RNA binding domain 18 92 IPR003029 GO:0003676
Cmo04g00133 344 Coils Coil 306 326 - -
Cmo04g00133 344 SMART S1_6 19 92 IPR022967 -
Cmo04g00133 344 SUPERFAMILY eIF-2-alpha, C-terminal domain 203 319 IPR024055 -
Cmo04g00133 344 SUPERFAMILY Nucleic acid-binding proteins 15 97 IPR012340 -
Cmo04g00133 344 CDD S1_IF2_alpha 18 93 IPR044126 GO:0003723
Cmo04g00133 344 Gene3D - 6 94 IPR012340 -
Cmo04g00133 344 Pfam Eukaryotic translation initiation factor 2 alpha subunit 130 260 IPR011488 GO:0003723|GO:0003743
Cmo04g00133 344 Gene3D Translation initiation factor 2; subunit 1; domain 2 95 171 IPR024054 -
Cmo04g00133 344 ProSiteProfiles S1 domain profile. 21 92 IPR003029 GO:0003676
Cmo04g00133 344 SUPERFAMILY eIF2alpha middle domain-like 94 199 IPR024054 -
Cmo04g00133 344 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 5 344 IPR011488 GO:0003723|GO:0003743
Cmo04g00133 344 MobiDBLite consensus disorder prediction 316 332 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00133 Cmo-Chr4:676530 Cmo04g01170 Cmo-Chr4:5966252 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00133 K03237 - csv:101209681 627.091