Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00143 ATGTGCGCAGTTGCAGTGCCGAAGACGACGACGACGATGACGAATTCATTATTCTCATCTCCAAAAATTGCTTCACTACTCTACAAGTCCTCGCTGAATTATTGTTGTTCTTCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGCCGAGATCGGTGTCCAGTCCTAGGAAGCTTCATGTTTCTGCTTCCTCAACGTCGCTGTTGCCATCGACGCCGCAACTTCCGCCTTCTGTTTCGCCGTTGGCTGTTGATACGGTTTTGAAGAGGAAGAGGCCGGCAAGGATCAATGTTCCGCAGTCGATTGATTTTATTGGATTTGGATTTGAGCAACCGGAGGTGATGGAGGAGGAAGAGGAAGAATACTCGGTTTATTGTAAAAGAGGAAGAAGACGCATCGCCGTGGAGGATCGATTCTCAGCCACTGTTGGAATTCAAGGAGATTCTCGACAGGCTTTCTTCGGAGTTTACGACGGGCATGGCGGAGCAAAAGTGGCGGAAATCGCAGCTAAAAGAATGAGCGAGAACGTGATCGATCAAGTGACGAGAAGAACCGATTCGGAACTTGAGGAAGCAATCAAAGACGGTTATCTCGCCACCGATCGGGAAGTATCAGAGGAAGGCGTCAGTGGCGGAGCCTGTTGCGTGGCCGCATTGATTCGGAACGGAAATCTCGCAGTCTCGAACGTCGGTGATTGTCGTGCCGTGTTGAGCCGAAGGGGAAAAGCCGAAGCCCTAACCTCCGACCACCGCCCTTGCAGAGAAGACGAGAGAAACCGGATCGAAAATTTGGGCGGTTACGTAGACTATTGCCGTGGTGCGTGGAGAGTTCAAGGAACATTAGCTGTATCGCGAGCCATTGGAGACGATCATCTGAAACAGTGGGTGATATCGGAACCAGAGACGAGAATGGTGAAGATTGAGGACGATTGTGATTTCTTGATCCTTGCTTCTGATGGATTTTGGGACAAGGTTAAAAATCAGGAAGCAGTAGACATAGTACAGAGCCTTTGCGGCGTAGAGATGGAGAAGCCAAAGCTATTCGCAGCCTGCAAAGAGCTAGCCGCCTTGTCAACATCACGAGGCTCAGTGGACGACACCACTGTTATGATCATCAAATTGTCCTCATTTCTCTGA 1146 49.3 MCAVAVPKTTTTMTNSLFSSPKIASLLYKSSLNYCCSSPSSSSSSSSSSSSSPRSVSSPRKLHVSASSTSLLPSTPQLPPSVSPLAVDTVLKRKRPARINVPQSIDFIGFGFEQPEVMEEEEEEYSVYCKRGRRRIAVEDRFSATVGIQGDSRQAFFGVYDGHGGAKVAEIAAKRMSENVIDQVTRRTDSELEEAIKDGYLATDREVSEEGVSGGACCVAALIRNGNLAVSNVGDCRAVLSRRGKAEALTSDHRPCREDERNRIENLGGYVDYCRGAWRVQGTLAVSRAIGDDHLKQWVISEPETRMVKIEDDCDFLILASDGFWDKVKNQEAVDIVQSLCGVEMEKPKLFAACKELAALSTSRGSVDDTTVMIIKLSSFL 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 736275 738114 - CmoCh04G001430.1 Cmo04g00143 379118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00143 381 MobiDBLite consensus disorder prediction 39 78 - -
Cmo04g00143 381 ProSitePatterns PPM-type phosphatase domain signature. 156 164 IPR000222 GO:0043169
Cmo04g00143 381 PANTHER PROTEIN PHOSPHATASE 2C 12 380 IPR015655 GO:0004722|GO:0006470
Cmo04g00143 381 CDD PP2Cc 125 377 IPR001932 -
Cmo04g00143 381 Pfam Protein phosphatase 2C 145 369 IPR001932 -
Cmo04g00143 381 ProSiteProfiles PPM-type phosphatase domain profile. 124 377 IPR001932 -
Cmo04g00143 381 Gene3D - 116 380 IPR036457 -
Cmo04g00143 381 SMART PP2C_4 115 375 IPR001932 -
Cmo04g00143 381 SUPERFAMILY PP2C-like 124 378 IPR036457 -
Cmo04g00143 381 MobiDBLite consensus disorder prediction 39 76 - -
Cmo04g00143 381 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 12 380 - -
Cmo04g00143 381 SMART PP2C_SIG_2 133 377 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01174 Cmo04g00143 ECH
Cmo04g00143 Cmo04g01174 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00706 Cmo-Chr1:3618988 Cmo04g00143 Cmo-Chr4:736275 5.06E-120 dispersed
Cmo04g00143 Cmo-Chr4:736275 Cmo04g01174 Cmo-Chr4:5994023 9.45E-166 dispersed
Cmo13g00046 Cmo-Chr13:280223 Cmo04g00143 Cmo-Chr4:736275 5.04E-19 wgd
Cmo04g00143 Cmo-Chr4:736275 Cmo04g01173 Cmo-Chr4:5993736 1.37E-15 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00143 K17506 - csv:101208170 476.092