Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00148 ATGTGTAGTGGCTCAAAGAACAAAGTTACTTCCTCGAATTCGGCCATGGACGCCAAGTTTCAGAAGCTTAACCATGGTTCTTTCTTCTCTGCGAGTTCAATTTTGCTTGAACTATCGGCTTCTGATGATATAGAAGGGTTCAAGAGAGAGGTTGAAGAAAATGGTTTGGATGTTGATGAACCAAGCTGCTGGTATGGCAGAGGAATTGGATCAAAGAAGATGGCTTTTGAAAAAAGAACTCCATTGATGATTGCTGCCATGTTTGGAAGCTCCAAGGTTGTCAAGCACTTAATTGGGACAGGCAAGGTTGATGTCAACAGGGCTTGTGGTTCAGATATGGTCACTGCTCTTCACTGTGCCACTGCTGGTGGCTCTGGTTCTTCCCTTGAGACCATCAAGCTCTTGCTCAACGGATCGGCCGATGTTGATTGTGTCGATGCTTATGGGAGAAAGCCTGTTGATTTGATTGTTTCAGCTTGTAGGATGGTGAGTAATTCAGGAAGAAAGGCTATGGAGATGTTGTTGAGAGGAGATGGTATGGCTGGGGAAGGTGATTTGAGCCTTTACCTTGAAGAAAACCAGCAGAAGATTATAGCTTCCCCGTCTGCCAAAGAAGGAAGTGACAAGAAAGAGTATCCGGTCGATGTATCACTGCCTGATATCAACAGTGGGATGTACGGTACGGATGATTTCAGGATGTATACCTTCAAAGTGAAGCCTTGTTCGAGGGCATATTCGCACGATTGGACTGAGTGTCCTTTCGTTCATCCTGGTGAGAACGCTAGGCGTAGAGACCCCAAGAAGTACCCATATAGCTGCGTTCCATGCCCCGAATTCCGTAAGGGGGCTTGCCCAAAGGGGGATTCCTGTGAGTATGCACATGGTGTCTTCGAGTCCTGGCTTCACCCTGCTCAATACCGAACCCGTCTCTGCAAGGATGAGACTGGCTGCAACAGGAAAGTTTGCTTCTTTGCTCACAAACCTGAAGATTTGCGCCCTGTATATGCTTCAACAGGCTCAGGCATGCCCTCACCCAGGTCTCTTTCGAGCAGTGCAGCGGATATGTCTACCATGAGCACATTGACTCTCGGTTCGTCATCGTTGTCATTACCGACAACTTCAACACCTCCCATGTCTCCCTTAGCATCAGTGTCTTCCCCTACAAATGGAAACTTGTGGCAGAACAAGATTAACCTTACCCCTCCTGCTCTGCAACTCTCTGGTAGTCGGTTAAAGACCACCTTGAGTGCAAGAGATTTGGATTTTGAGATGGAATTGCTCGGGTTGGAAAAGAACGCGAGCCAGCTACAACATCAGCAGCAGTTGATCGACGAGATATCTCGACTTTCCACTCCTAATTACTGGAGTGGAGATGTAAGCAGGAGTGCCGAGTTGAAGCCGTCAAACCTTGATGACATGTTTGGATCATTAGATTCTTCCTTGTTGTCTCAGTTGCAGGGTGGCTCGCTAAAAACTTCTCAGGTTCAATCTCCGACCGGGATGCAGATGCGCCAAAATATGAACCAACTCCGTGCAAGCTACCCGGCTAACTTAACATCCTCACCTGTAAAGAAGCCCTCCTCTTTTGGCTTTGATTCATCAAGTGCAGTGGCAGCTGCTGTGATGAACTCAAGGTCTGCTGCCTTTGCAAAACGAAGCCAAAGTTTCATCGATCGAGCTGCAGTGCCTCGTCTTCCCGGGTTTACCACAGCTGCAAACTCTGCAGCTACAATGTCTTCCCATCTCTCAGGTTGGAACTCACCCGATGGCAAACTAGACTGGGGAGTACACAGCAACAATCTCAACAAACTCCAGAAATCTGCTTCGTTTGCCATCCGAAACAATGGCATAGGAGGTCCCACAACCTTTGCACCATCCGCAGGGGAGCCCGACGTCTCTTGGGTTAACTCCTTGGTTAAAGACGTTCCCTCCGACAGCTTTGAGCAGTTCGGTGCGAAGAAGCGGCAATACAACCTCAAAAGAGAAATCAACGAGATGCTCCCATCCTGGATGGAGCAGCAGTTGTATGCAGAGCAGGAGCAGATAGTGGCATAA 2055 48.22 MCSGSKNKVTSSNSAMDAKFQKLNHGSFFSASSILLELSASDDIEGFKREVEENGLDVDEPSCWYGRGIGSKKMAFEKRTPLMIAAMFGSSKVVKHLIGTGKVDVNRACGSDMVTALHCATAGGSGSSLETIKLLLNGSADVDCVDAYGRKPVDLIVSACRMVSNSGRKAMEMLLRGDGMAGEGDLSLYLEENQQKIIASPSAKEGSDKKEYPVDVSLPDINSGMYGTDDFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKYPYSCVPCPEFRKGACPKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCNRKVCFFAHKPEDLRPVYASTGSGMPSPRSLSSSAADMSTMSTLTLGSSSLSLPTTSTPPMSPLASVSSPTNGNLWQNKINLTPPALQLSGSRLKTTLSARDLDFEMELLGLEKNASQLQHQQQLIDEISRLSTPNYWSGDVSRSAELKPSNLDDMFGSLDSSLLSQLQGGSLKTSQVQSPTGMQMRQNMNQLRASYPANLTSSPVKKPSSFGFDSSSAVAAAVMNSRSAAFAKRSQSFIDRAAVPRLPGFTTAANSAATMSSHLSGWNSPDGKLDWGVHSNNLNKLQKSASFAIRNNGIGGPTTFAPSAGEPDVSWVNSLVKDVPSDSFEQFGAKKRQYNLKREINEMLPSWMEQQLYAEQEQIVA 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 775143 777197 - CmoCh04G001480.1 Cmo04g00148 379123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00148 684 Pfam Ankyrin repeats (3 copies) 79 144 IPR002110 GO:0005515
Cmo04g00148 684 ProSiteProfiles Zinc finger C3H1-type profile. 270 297 IPR000571 GO:0046872
Cmo04g00148 684 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 21 682 - -
Cmo04g00148 684 Gene3D - 32 175 IPR036770 -
Cmo04g00148 684 ProSiteProfiles Ankyrin repeat profile. 112 147 IPR002110 GO:0005515
Cmo04g00148 684 MobiDBLite consensus disorder prediction 334 386 - -
Cmo04g00148 684 MobiDBLite consensus disorder prediction 340 386 - -
Cmo04g00148 684 Gene3D - 271 333 - -
Cmo04g00148 684 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 295 IPR000571 GO:0046872
Cmo04g00148 684 SMART ANK_2a 112 144 IPR002110 GO:0005515
Cmo04g00148 684 SMART ANK_2a 77 107 IPR002110 GO:0005515
Cmo04g00148 684 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Cmo04g00148 684 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Cmo04g00148 684 PANTHER UNKEMPT FAMILY MEMBER 21 682 IPR045234 -
Cmo04g00148 684 SUPERFAMILY Ankyrin repeat 35 154 IPR036770 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01178 Cmo04g00148 ECH
Cmo04g00148 Cmo04g01178 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00746 Cmo-Chr2:4682284 Cmo04g00148 Cmo-Chr4:775143 0 dispersed
Cmo04g00148 Cmo-Chr4:775143 Cmo20g00367 Cmo-Chr20:1811451 0 dispersed
Cmo16g00239 Cmo-Chr16:1052957 Cmo04g00148 Cmo-Chr4:775143 1.30E-51 transposed
Cmo04g00148 Cmo-Chr4:775143 Cmo04g01178 Cmo-Chr4:6019943 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9508 PF12796 Ank_2 1.60E-07 CL0465 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00148 - - cmax:111490802 1239.56