Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00153 ATGACGAGATTACCCCTTCTCACCGCCGCTATCCCCGTCATCTCTTTCATCGCTTTCGTTTTCCCTCTGCTTCCGGCGACCTTAGCTCTCGGCTCTGCCTCCACGCTTGCTGTCAGCTACGGTTCCACCACCGTCTGCGGCATCGTCGCTGAGCAGCCCACGCAAAGGATTCTCTGCTTCCGTCGCGGTCAAACCATTTTTATTGACCCAAATATTTCCTTCTCCGTCGTCTCCGCCGGTCGGGATACCTTCTGCGGCATAAGAGCCGGCGGCTATACTCTTCTCTGCTGGGACTTTGATCAAAATACCGCTGCGTTTTCCCGGAGAAGGCTTTACTTTAACTCCACTGTTCTTCTCGAGAATCTCGCCGTCGGCGACGACCAAATCTGTGCCACCGTGGTCGGCGCCGGCAATGCAACTTGCTGGCGCGATGGTAACAACGTGCGAGTTGGATTTTCTTCTCTTCAATTCGATTCAATTTCTTCTGGGTTTGGATTTTCTTGCGGAATTTTGAAGGGTAATCAATCTGTTCGATGTTGGGGTCGGAATTCGTCGATTGCGGCCCTAATTGAAAATGGGTTTCGAAATATCTCAATGTCGATCATCGTCGCCGGTGGGTTTCATGCTTGTGGATTGAACATCTCCGGTGGGTTGGTTTGTAGGGGGAACAACGATTTTGGGCAGTTGGATTTTCCTTCGAATTCATCCAGAGGGTTCTCTGAATTGGCCCTCGGCGAACGCCATAGCTGTGGGATTTTGCTCTCGAATCGATCTGTCGTTTGTTGGGGAAGCTCAGATTTCTCTGTGGATTCAATTCGACAAACTTCTTTTGAGTTAATTTCTTCGGGATCGGATTTCGTTTGTGGATTAACAACGAGTAATTTCTCTGTTCTTTGTTGGGGGCCTGGCTGGTCGAACGATTCTTCTGGTCTTTTTTCACTTTCTCTTCCTAAGATTCTTCCTGGTCCTTGTGTTCAATCTTCTTGTCGGGATTGTGGTGTTTATCCTCTCTCTCAAACGCTCTGTTCTGATTCTGGGAATGTCTGTAATCGTTGTTTGGTTACTGTTTCACCGCCGTTTTCGCCAATACCGCCCTCGCCGCCGCCAATGGTGATGATCCCATCACCTCCTCCAGCGGCATTGAGAAAGGGTTTGCTGGCTTTTGCTATTGTGGGCTCAGTTGGGGCCGTTGCTGGGATTTGTACTGTTGTTTACTGTTTATGGACTGGTGTTTGTTTTGGTCATAAGAAGATACACAACTCTGTTCAGCCGACCATTACTCGAGCTGCTAGCTCAAATGGTGGGACGACAACGTCAAACACGAACAACAGCCCGCCATCGCGGTCATCGACGATTCGGCGACAAGGGTCTCGAATAATGCGGAGGCAGAGGAGTGGTACGTCCTCGAAGCACGCCGATAGAGCAGAAGAATTCACTCTGGCTGAGCTTGCTTTGGCTACCAATGACTTCTCCCATGAGAACAAGATTGGTGAAGGGAGCTTTGGCATTGTGTACCGTGGGAAACTCAGCGATGGGCGTGAGGTTGCGATCAAGAGAGGCGAAACGGGGCCGAAGACAAAGAAGTTTCAGGAGAAGGAGAGTGCTTTTGATTCAGAATTGGCGTTCTTGTCTAGACTTCATCACAAGCATTTGGTGAGGCTTGTGGGGTATTGTGAGGAGAAAGATGAGCGGCTTTTGGTTTATGAGTATATGAAGAATGGTGCACTTTACAATCATCTTCATGACAAGACCAACTCTGAAAAGGGCAGCAGTGTTGTGAACTCTTGGAAGATGAGGATCAAAATTGCTTTAGATGCAGCAAGAGGAATTGAATATCTTCATAACTATGCAGTCCCTCCTATAATCCATAGGGATATCAAATCATCCAACATTCTTCTCGATTCGAATTGGACAGCGAGAGTATCCGATTTCGGGTTGTCGTTGATGAGCCCCGGGTCAGACCTTGATTACCGACCGACAAAGGCAGCTGGGACGGTTGGTTACATTGATCCCGAGTACTATGGACTGAACGTTTTGACTGCTAAGAGTGATGTGTATGGGCTTGGGGTGGTGTTGCTGGAGCTTTTGACAGGGAAGAGAGCTATATTTAAGGATGATGAGCGAGGAGGGACACTGGTGAGCGTGGTCGATTTTGCAGTGCCTGCGATTACGATCGGAGAACTGGGGAAGATTTTGGATCCAAGAGTCGGGCCGCCGCAGATGAACGAAGCAGAGGCAGTAGAGCTTGTGGCTTACACAGCGATGCACTGCGTGCGTTTGGAAGGGAAAGATCGGCCAACGATGATTGACATTGTTGTGAATTTGGAACGAGCTTTGAATCTTTGTGATGATAGTCATGGCAACAGCTCTAGTGGTGGAATTTCCATTGTTTCAGAGTGA 2400 48.83 MTRLPLLTAAIPVISFIAFVFPLLPATLALGSASTLAVSYGSTTVCGIVAEQPTQRILCFRRGQTIFIDPNISFSVVSAGRDTFCGIRAGGYTLLCWDFDQNTAAFSRRRLYFNSTVLLENLAVGDDQICATVVGAGNATCWRDGNNVRVGFSSLQFDSISSGFGFSCGILKGNQSVRCWGRNSSIAALIENGFRNISMSIIVAGGFHACGLNISGGLVCRGNNDFGQLDFPSNSSRGFSELALGERHSCGILLSNRSVVCWGSSDFSVDSIRQTSFELISSGSDFVCGLTTSNFSVLCWGPGWSNDSSGLFSLSLPKILPGPCVQSSCRDCGVYPLSQTLCSDSGNVCNRCLVTVSPPFSPIPPSPPPMVMIPSPPPAALRKGLLAFAIVGSVGAVAGICTVVYCLWTGVCFGHKKIHNSVQPTITRAASSNGGTTTSNTNNSPPSRSSTIRRQGSRIMRRQRSGTSSKHADRAEEFTLAELALATNDFSHENKIGEGSFGIVYRGKLSDGREVAIKRGETGPKTKKFQEKESAFDSELAFLSRLHHKHLVRLVGYCEEKDERLLVYEYMKNGALYNHLHDKTNSEKGSSVVNSWKMRIKIALDAARGIEYLHNYAVPPIIHRDIKSSNILLDSNWTARVSDFGLSLMSPGSDLDYRPTKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKDDERGGTLVSVVDFAVPAITIGELGKILDPRVGPPQMNEAEAVELVAYTAMHCVRLEGKDRPTMIDIVVNLERALNLCDDSHGNSSSGGISIVSE 799
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 802226 804625 + CmoCh04G001530.1 Cmo04g00153 379128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00153 799 SUPERFAMILY Protein kinase-like (PK-like) 471 775 IPR011009 -
Cmo04g00153 799 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 13 798 IPR044815 GO:0004674
Cmo04g00153 799 Gene3D Phosphorylase Kinase; domain 1 451 570 - -
Cmo04g00153 799 MobiDBLite consensus disorder prediction 429 473 - -
Cmo04g00153 799 SUPERFAMILY RCC1/BLIP-II 200 306 IPR009091 -
Cmo04g00153 799 MobiDBLite consensus disorder prediction 429 454 - -
Cmo04g00153 799 ProSitePatterns Protein kinases ATP-binding region signature. 496 518 IPR017441 GO:0005524
Cmo04g00153 799 ProSiteProfiles Protein kinase domain profile. 490 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00153 799 Pfam Protein kinase domain 491 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00153 799 Pfam Regulator of chromosome condensation (RCC1) repeat 159 184 - -
Cmo04g00153 799 Gene3D Transferase(Phosphotransferase) domain 1 571 790 - -
Cmo04g00153 799 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Cmo04g00153 799 Gene3D - 119 340 IPR009091 -
Cmo04g00153 799 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR3-RELATED 13 798 - -
Cmo04g00153 799 SUPERFAMILY RCC1/BLIP-II 65 185 IPR009091 -
Cmo04g00153 799 SMART serkin_6 490 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01183 Cmo04g00153 ECH
Cmo04g00153 Cmo04g01183 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00697 Cmo-Chr1:3559140 Cmo04g00153 Cmo-Chr4:802226 0 dispersed
Cmo04g00153 Cmo-Chr4:802226 Cmo14g01512 Cmo-Chr14:12125350 1.05E-16 dispersed
Cmo09g01236 Cmo-Chr9:10604944 Cmo04g00153 Cmo-Chr4:802226 4.18E-136 transposed
Cmo13g00053 Cmo-Chr13:316316 Cmo04g00153 Cmo-Chr4:802226 0 wgd
Cmo04g00153 Cmo-Chr4:802226 Cmo04g01183 Cmo-Chr4:6053883 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74227 PF00069 Pkinase 6.20E-44 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00153 - - bhj:120081574 1307.74