Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g00161 | ATGGTTTCCATATATCGTGATCGGACGTCGGAGTTTCGGTCGCTGTCGGATACGCTGAGGAAGATTGCCGGAGTCACAGCCGACGTTCATCCAGTTCAAAATGAACCATCGGCGTCCGTACTCTCCGGATCACCGGGCTTTGCACGGTCTGAATTCAGCAGGAAGGCATCTCTTATCGGCTGGGGAATCCAAGAAGCCTCTCAGAAGATCGCGAGGCTTGCTCAGTTAGCAAAAAGATCATCGATGTTTGATGATCCAATCAGGGAAATCCAGGAAATGACTGCTTTGATTAAGAATGATATTACATCATTGAATGTAGCTATCTCAGATTTGCAAGCCATCCAAACGATGGAGATAGCAGAGGGGAATTATTCTGAGGACAGAGTTGTTCATTCAACCGCTGTCTGCGATGACCTCAAGAGTAAACTCATGGGAGCTACAAAACAACTTCAAGATGTGTTAACTGCAAGAACAGAGAATATCAAGGCCAATGAGAGCCGGAGACAAATATTCTCTGCAAATGCAACTAGAGAAAGTCCTTTTCAAAATCAAGCTAAAACTGTAACTCAACCTCCACCTTGGTTAAGTAATACATCTGAAAGTGCTCAATCATCCTTGTTGTCATCAAATGGAGGTCAAGCTGGGGGTCAATTGAGACGAAGGCTAGCTGTGGAGGTCATCCCATCACAGCAAATGGAGATGTCAATGTTACAGCAGGTGGTTCCTAGGCAGGAAAACTATTTACAAAGTCGGGCAGGTGCTCTCCACAATGTGGAATCCACCATTTCAGAACTGGGTGGAATTTTTACACATCTTGCCACAATGGTAGCACATCAAGGAGAACTTGCTATCAGGATTGATGACAACATGGATGAATCAATGGCGAATGTAGAAGGTGCTCGAACCTCTCTCTTTAGGCATCTTAACCAGATATCATCAAACAGATGGCTTCTTGTCAAAATATTTGTGATTTTAATCATTTTCTTGATGCTCTTTATTTTCTTGGCATAA | 1011 | 43.62 | MVSIYRDRTSEFRSLSDTLRKIAGVTADVHPVQNEPSASVLSGSPGFARSEFSRKASLIGWGIQEASQKIARLAQLAKRSSMFDDPIREIQEMTALIKNDITSLNVAISDLQAIQTMEIAEGNYSEDRVVHSTAVCDDLKSKLMGATKQLQDVLTARTENIKANESRRQIFSANATRESPFQNQAKTVTQPPPWLSNTSESAQSSLLSSNGGQAGGQLRRRLAVEVIPSQQMEMSMLQQVVPRQENYLQSRAGALHNVESTISELGGIFTHLATMVAHQGELAIRIDDNMDESMANVEGARTSLFRHLNQISSNRWLLVKIFVILIIFLMLFIFLA | 336 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 833822 | 837102 | - | CmoCh04G001610.1 | Cmo04g00161 | 379136 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g00161 | 336 | CDD | SNARE_syntaxin5 | 248 | 333 | - | - | |
Cmo04g00161 | 336 | MobiDBLite | consensus disorder prediction | 173 | 214 | - | - | |
Cmo04g00161 | 336 | Pfam | Syntaxin-5 N-terminal, Sly1p-binding domain | 6 | 21 | IPR021538 | - | |
Cmo04g00161 | 336 | SUPERFAMILY | t-snare proteins | 48 | 300 | IPR010989 | GO:0016020|GO:0016192 | |
Cmo04g00161 | 336 | PANTHER | SYNTAXIN-31 | 4 | 335 | - | - | |
Cmo04g00161 | 336 | ProSitePatterns | Syntaxin / epimorphin family signature. | 251 | 290 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Cmo04g00161 | 336 | SMART | tSNARE_6 | 240 | 307 | IPR000727 | - | |
Cmo04g00161 | 336 | Gene3D | - | 48 | 300 | - | - | |
Cmo04g00161 | 336 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 245 | 307 | IPR000727 | - | |
Cmo04g00161 | 336 | Pfam | SNARE domain | 282 | 333 | IPR000727 | - | |
Cmo04g00161 | 336 | PANTHER | SYNTAXIN | 4 | 335 | IPR045242 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo04g00161 | Cmo04g01191 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g00161 | Cmo-Chr4:833822 | Cmo12g00252 | Cmo-Chr12:1636967 | 2.98E-72 | dispersed | |
Cmo04g00161 | Cmo-Chr4:833822 | Cmo04g01191 | Cmo-Chr4:6096388 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g00161 | K08490 | - | csv:101213786 | 484.567 |