Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00163 ATGGAGGCAAAGGAAGAAGACGTACGATTGGGAGCCAACAAGTTCAACGAGAGGCAGCCCATTGGAACGGCGGCGCAGAGCCAAGACGATGGCAAAGACTACAAGGAGCCACCGCCGGCGCCGTTATTCGAGCCGGGGGAGCTGACCTCATGGTCGTTTTACAGAGCTGGAATCGCGGAGTTCTTCGCGACTTTCCTCTTCCTTTACATAACCGTTTTGACGGTTATGGGAGTCGTTCGGTCCAATGAAGCCAACGGCAACACGTGCAAGACCGTTGGAATTCAGGGCATTGCTTGGGCTTTTGGTGGTATGATTTTTGCGTTGGTTTACTGCACCGCTGGGATCTCCGGTGGCCACATCAACCCGGCGGTGACTTTTGGGCTGTTTCTGGCGAGGAAGCTGTCGTTGACCAGGGCCATTTTCTATATGGTGATGCAGTGCCTTGGCGCCATCTGCGGCGCGGGTGTTGTGAAGGGGTTCCAACCCAAGCCGTTCGACAGGCTCGGCGGTGGAGCTAACGTGGTCAGCAAGGGATACACTAAAGGAGACGGCCTCGGCGCTGAGATCGTCGGTACCTTTATCCTTGTTTACACCGTCTTCTCCGCCACTGACGCCAAACGTAGCGCCAGAGACTCGCATGTTCCCATTTTGGCACCGCTGCCAATTGGGTTCGCAGTGTTCTTAGTTCACTTGGCAACCATTCCGATCACCGGCACCGGCATCAACCCTGCTCGGAGTTTGGGCGCTGCCATCATCTACAACAACGAAAAAGCCTGGGATGACCACTGGATTTTCTGGGTTGGACCGTTCATTGGAGCAGGATTGGCAGCTTTGTACCACCAGGTGGTGATCAGAGCCATACCCTTCAAGTCCAAGTGA 879 55.18 MEAKEEDVRLGANKFNERQPIGTAAQSQDDGKDYKEPPPAPLFEPGELTSWSFYRAGIAEFFATFLFLYITVLTVMGVVRSNEANGNTCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYMVMQCLGAICGAGVVKGFQPKPFDRLGGGANVVSKGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNNEKAWDDHWIFWVGPFIGAGLAALYHQVVIRAIPFKSK 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 841489 842838 + CmoCh04G001630.1 Cmo04g00163 379138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00163 292 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 292 IPR034294 -
Cmo04g00163 292 SUPERFAMILY Aquaporin-like 47 285 IPR023271 -
Cmo04g00163 292 Gene3D Glycerol uptake facilitator protein. 40 291 IPR023271 -
Cmo04g00163 292 PANTHER AQUAPORIN PIP1-4-RELATED 1 292 - -
Cmo04g00163 292 Pfam Major intrinsic protein 47 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g00163 292 MobiDBLite consensus disorder prediction 1 39 - -
Cmo04g00163 292 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g00163 292 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g00163 292 PRINTS Major intrinsic protein family signature 138 157 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g00163 292 PRINTS Major intrinsic protein family signature 101 125 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g00163 292 PRINTS Major intrinsic protein family signature 263 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g00163 292 PRINTS Major intrinsic protein family signature 187 205 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g00163 292 ProSitePatterns MIP family signature. 119 127 IPR022357 -
Cmo04g00163 292 TIGRFAM MIP: MIP family channel proteins 59 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo04g00163 292 CDD MIP 55 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00163 Cmo04g01194 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00163 Cmo-Chr4:841489 Cmo04g01196 Cmo-Chr4:6112222 0 dispersed
Cmo04g00163 Cmo-Chr4:841489 Cmo04g00164 Cmo-Chr4:843579 0 tandem
Cmo04g00163 Cmo-Chr4:841489 Cmo04g01194 Cmo-Chr4:6106583 0 wgd
Cmo04g00163 Cmo-Chr4:841489 Cmo06g00230 Cmo-Chr6:1232789 1.65E-62 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00163 K09872 - csv:101215145 566.614