Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00202 ATGGCAAGTCGATGGTGGGCTGAAAATATACCCACCACCACAGATAGCAGCACCACCAACCCTTATTCGACTCCATTAAAGCAAAGCTTAGAAGCTGCGGATGAAGAAAACAACTCCGGCAGCTATGAGAGAGTTGAACCAGGCACCGGCTCCACCACGCGCCGCCCACGTGGTCGGCCGCCGGGATCCAAAAACAAGATGAAGCCTCCGGTGGTAGTCACCAAGGAGAGCCCCGATGCTCTCCGGAGCCACGTTTTAGAAATCGGCAGCGGCAGCGATATCGTCGAAAGCATCTCGAACTTCGCTCAACGCCGCCAGCGAGGGGTTTCTGTCCTCAGTGGAAATGGGGTTGTCGCCAATGTCACTCTAAGGCATCCGGCCGCCCCTGGCAACGTTATTACTCTACAGGGACGGTTTGATATATTGTCGCTCTCCGGTGCCTTTTTGCCTTCCCCTGCTCCACCAGGGGCTACCGGACTAACAGTCTACTTGGCTGGTGGGCAGGGGCAGGTCGTTGGTGGCATTGTCGTCGGTGCTCTCATCGCAACCGGTCCAGTTATTGTCATCGCTGCTACCTTCACCAATGCCACATACGAGCAGCTACCGCTTGAGGATGAGGAGGCAGCTGCCGGAGACAAGTCCGGAAATAGCCAAAACAATTCAACTTCTCAGAGCATGGGGGATCAGCAACAGCAGCAGCCTTCAATGGGAAATTACAATATGACTTCAAATTTGGTGCCAAATGGTCAGGTTTCTTCGCATGATGTGTTTTGGAGTCCTCCTCGAGCCCCACCTCCATTCTAA 804 54.23 MASRWWAENIPTTTDSSTTNPYSTPLKQSLEAADEENNSGSYERVEPGTGSTTRRPRGRPPGSKNKMKPPVVVTKESPDALRSHVLEIGSGSDIVESISNFAQRRQRGVSVLSGNGVVANVTLRHPAAPGNVITLQGRFDILSLSGAFLPSPAPPGATGLTVYLAGGQGQVVGGIVVGALIATGPVIVIAATFTNATYEQLPLEDEEAAAGDKSGNSQNNSTSQSMGDQQQQQPSMGNYNMTSNLVPNGQVSSHDVFWSPPRAPPPF 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1004403 1005206 + CmoCh04G002020.1 Cmo04g00202 379177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00202 267 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 195 IPR005175 -
Cmo04g00202 267 MobiDBLite consensus disorder prediction 206 267 - -
Cmo04g00202 267 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 208 - -
Cmo04g00202 267 ProSiteProfiles PPC domain profile profile. 78 216 IPR005175 -
Cmo04g00202 267 MobiDBLite consensus disorder prediction 1 48 - -
Cmo04g00202 267 Gene3D - 81 209 - -
Cmo04g00202 267 MobiDBLite consensus disorder prediction 1 76 - -
Cmo04g00202 267 PIRSF ESCAROLA 8 265 IPR014476 GO:0003680
Cmo04g00202 267 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 19 266 IPR014476 GO:0003680
Cmo04g00202 267 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 19 266 - -
Cmo04g00202 267 MobiDBLite consensus disorder prediction 212 255 - -
Cmo04g00202 267 CDD DUF296 82 165 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00202 Cmo15g00111 CCT
Cmo04g00202 Cmo04g03067 CCT
Cmo04g00202 Cmo04g01239 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00202 Cmo-Chr4:1004403 Cmo06g01345 Cmo-Chr6:9973532 3.75E-71 dispersed
Cmo15g00111 Cmo-Chr15:536548 Cmo04g00202 Cmo-Chr4:1004403 3.04E-69 wgd
Cmo04g00202 Cmo-Chr4:1004403 Cmo04g01239 Cmo-Chr4:6293402 6.47E-167 wgd
Cmo04g00202 Cmo-Chr4:1004403 Cmo04g03067 Cmo-Chr4:21427943 4.28E-65 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00202 - - csv:101217530 433.721