Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g00202 | ATGGCAAGTCGATGGTGGGCTGAAAATATACCCACCACCACAGATAGCAGCACCACCAACCCTTATTCGACTCCATTAAAGCAAAGCTTAGAAGCTGCGGATGAAGAAAACAACTCCGGCAGCTATGAGAGAGTTGAACCAGGCACCGGCTCCACCACGCGCCGCCCACGTGGTCGGCCGCCGGGATCCAAAAACAAGATGAAGCCTCCGGTGGTAGTCACCAAGGAGAGCCCCGATGCTCTCCGGAGCCACGTTTTAGAAATCGGCAGCGGCAGCGATATCGTCGAAAGCATCTCGAACTTCGCTCAACGCCGCCAGCGAGGGGTTTCTGTCCTCAGTGGAAATGGGGTTGTCGCCAATGTCACTCTAAGGCATCCGGCCGCCCCTGGCAACGTTATTACTCTACAGGGACGGTTTGATATATTGTCGCTCTCCGGTGCCTTTTTGCCTTCCCCTGCTCCACCAGGGGCTACCGGACTAACAGTCTACTTGGCTGGTGGGCAGGGGCAGGTCGTTGGTGGCATTGTCGTCGGTGCTCTCATCGCAACCGGTCCAGTTATTGTCATCGCTGCTACCTTCACCAATGCCACATACGAGCAGCTACCGCTTGAGGATGAGGAGGCAGCTGCCGGAGACAAGTCCGGAAATAGCCAAAACAATTCAACTTCTCAGAGCATGGGGGATCAGCAACAGCAGCAGCCTTCAATGGGAAATTACAATATGACTTCAAATTTGGTGCCAAATGGTCAGGTTTCTTCGCATGATGTGTTTTGGAGTCCTCCTCGAGCCCCACCTCCATTCTAA | 804 | 54.23 | MASRWWAENIPTTTDSSTTNPYSTPLKQSLEAADEENNSGSYERVEPGTGSTTRRPRGRPPGSKNKMKPPVVVTKESPDALRSHVLEIGSGSDIVESISNFAQRRQRGVSVLSGNGVVANVTLRHPAAPGNVITLQGRFDILSLSGAFLPSPAPPGATGLTVYLAGGQGQVVGGIVVGALIATGPVIVIAATFTNATYEQLPLEDEEAAAGDKSGNSQNNSTSQSMGDQQQQQPSMGNYNMTSNLVPNGQVSSHDVFWSPPRAPPPF | 267 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 1004403 | 1005206 | + | CmoCh04G002020.1 | Cmo04g00202 | 379177 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g00202 | 267 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 82 | 195 | IPR005175 | - | |
Cmo04g00202 | 267 | MobiDBLite | consensus disorder prediction | 206 | 267 | - | - | |
Cmo04g00202 | 267 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 79 | 208 | - | - | |
Cmo04g00202 | 267 | ProSiteProfiles | PPC domain profile profile. | 78 | 216 | IPR005175 | - | |
Cmo04g00202 | 267 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Cmo04g00202 | 267 | Gene3D | - | 81 | 209 | - | - | |
Cmo04g00202 | 267 | MobiDBLite | consensus disorder prediction | 1 | 76 | - | - | |
Cmo04g00202 | 267 | PIRSF | ESCAROLA | 8 | 265 | IPR014476 | GO:0003680 | |
Cmo04g00202 | 267 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 19 | 266 | IPR014476 | GO:0003680 | |
Cmo04g00202 | 267 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 19 | 266 | - | - | |
Cmo04g00202 | 267 | MobiDBLite | consensus disorder prediction | 212 | 255 | - | - | |
Cmo04g00202 | 267 | CDD | DUF296 | 82 | 165 | IPR005175 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo04g00202 | Cmo15g00111 | CCT | |
Cmo04g00202 | Cmo04g03067 | CCT | |
Cmo04g00202 | Cmo04g01239 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g00202 | Cmo-Chr4:1004403 | Cmo06g01345 | Cmo-Chr6:9973532 | 3.75E-71 | dispersed | |
Cmo15g00111 | Cmo-Chr15:536548 | Cmo04g00202 | Cmo-Chr4:1004403 | 3.04E-69 | wgd | |
Cmo04g00202 | Cmo-Chr4:1004403 | Cmo04g01239 | Cmo-Chr4:6293402 | 6.47E-167 | wgd | |
Cmo04g00202 | Cmo-Chr4:1004403 | Cmo04g03067 | Cmo-Chr4:21427943 | 4.28E-65 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g00202 | - | - | csv:101217530 | 433.721 |