Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00203 ATGACAGGGCTTACCTCTTATTCTTCTTCTTCTTCTTCTTCTTCTTGTGGTGCCTGCAAGTTTCTTAGACGAAAATGTAGTAATCACTGTGTTTTTGCTCCTTTCTTCACCTATGATGAAGCTACTTCTCACTTTGCTGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCCAAGCTTCTCTTGCACCTCCCCATGCACATCCGTAGCCACGCTGCCATCACTGTTGCTTATGAAGCTCTCGAGCGCATGCGAGATCCTACTTATGGTTGTGTTGCACATATCTTCGCGTTGCAACAAGAGATCATGAGTTTACAAGAAGAGATAGATATGTTAGGGAGCCAAATTGCCAACTTCACCGCTGATATGGACAACGTTGCAGTCGTCGAGAACCCATGTATAGAGCTTCAAGTCTCGAAACAGTTGAATGATTTGGTGATGAACACAAATGATTATCAAAATGAGTTGCTCTCTCAACTGCCGAATTTTGATCAAGTCGAAATTAATGATGCTCAAATGATATCTCCATTGTTTTGTATCGGGGAAGAAGACGGGTTTTTCGGGTGCAACCCAAATAACGCTATGGAGAATTCAGCCTTTGATGTAGCAGTTGATGAAACCTTTGGTTATCTATGGTAG 639 42.1 MTGLTSYSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFTADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPNFDQVEINDAQMISPLFCIGEEDGFFGCNPNNAMENSAFDVAVDETFGYLW 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1007304 1008013 - CmoCh04G002030.1 Cmo04g00203 379178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00203 212 ProSiteProfiles LOB domain profile. 14 116 IPR004883 -
Cmo04g00203 212 PANTHER LOB DOMAIN CONTAINING PROTEIN 12 160 - -
Cmo04g00203 212 Coils Coil 95 122 - -
Cmo04g00203 212 PANTHER LOB DOMAIN-CONTAINING PROTEIN 33 12 160 - -
Cmo04g00203 212 Pfam Lateral organ boundaries (LOB) domain 15 112 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00203 Cmo04g01240 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00203 Cmo-Chr4:1007304 Cmo08g00921 Cmo-Chr8:6007802 6.70E-47 dispersed
Cmo04g00203 Cmo-Chr4:1007304 Cmo04g01240 Cmo-Chr4:6297067 1.03E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9513 PF03195 LOB 7.30E-33 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00203 K13945 - csv:101204875 290.812