Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00206 ATGTCGTCGATGGCGGCGGCGTCGTCCTACTGGTGTTATCGATGCAGTCGATTTGTTAGGGCTTCGAATCAGGAATCTGTTGTGTGCCCCGATTGTAATAGTGGGTTCGTTGAACAAATTGATCATCCATTGAGCTTGCGGAACATGGAAACGGCGCCGCGGAGGAGGTTTCCAGCGTCGGCGATGTATATGATTGGTCATCGGTCGAATTCGAGGCAGAATTTGGGATCTGCGATTCGGAGACCTCGAAGGAATGGAGGGGATCGATCGCCGTTTAATCCTGTCATAGTTCTTCGTGGGCCGCCTGATGGGAGTGAAGGTGGAGAAAGTCGTCGGTTCGAGCTTTATTACGATGATGGTACTGGTTCTGGCCTGAGACCTCTGCCTCCGAGTATGTCGGAGTTTTTGTTAGGGTCAGGGTTTGATAGGCTTCTGGAGCAACTTTCTCATATTGAAATGAACAGCATTGGGCAATTTGAAACCCCTCCAGCGTCCAAATCTGCGATTGAGTCAATGCCCACTATTCGAATCTGTGAAAATCATTTGGAAACTGAGTCGCACTGTGCTGTTTGTAAAGAGGCATTCGAATTGGGAAACGAAGCACGGGAGATGCCCTGCACGCATATCTACCATTCTGATTGCATTCTACCTTGGCTTTCAATTCGAAATTCCTGTCCGGTATGTCGCCACGAACTGCCTTCGGATAACCAAGACTCATTGGATGCTGCTGAAATTGGCGTGAATGGGGGTTCGATGACCTCGAATGTGGATGAGAATGGGGGGTTAACCATATGGAGGCTCCCAGGTGGGGGGTTTGCAGTAGGGCGGTTCCATGGAGGGAGGAGAGGTGGGGAGAGAGAGCTCCCTGTTGTGTACACTGAGGTGGATGGTGCTTTTACAAATGGCGGCGTTCCTAGAAGGGTATCATTTGGATCGAGACGCGGGAGAGGGAGGGAAAGAGGCGGGTGGAGGCGCTTTGTTCGCAATATGTTTGGATGTTTCAGGCAACAACCAATGAGGTCGTCTGCGGCATATACTTCAAGTTCCAGCCCTGATTCTGGTCCTTCAAGGAGTAGTAGTAGTAGACCACTCCCGCAGATGAACGCAGAGCCAAGGCAACGGCGGACATGGTCTATGGAGGTTAACAGCGGGACAAGCAGCTGGTGA 1167 51.16 MSSMAAASSYWCYRCSRFVRASNQESVVCPDCNSGFVEQIDHPLSLRNMETAPRRRFPASAMYMIGHRSNSRQNLGSAIRRPRRNGGDRSPFNPVIVLRGPPDGSEGGESRRFELYYDDGTGSGLRPLPPSMSEFLLGSGFDRLLEQLSHIEMNSIGQFETPPASKSAIESMPTIRICENHLETESHCAVCKEAFELGNEAREMPCTHIYHSDCILPWLSIRNSCPVCRHELPSDNQDSLDAAEIGVNGGSMTSNVDENGGLTIWRLPGGGFAVGRFHGGRRGGERELPVVYTEVDGAFTNGGVPRRVSFGSRRGRGRERGGWRRFVRNMFGCFRQQPMRSSAAYTSSSSPDSGPSRSSSSRPLPQMNAEPRQRRTWSMEVNSGTSSW 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1021063 1022229 + CmoCh04G002060.1 Cmo04g00206 379181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00206 388 MobiDBLite consensus disorder prediction 72 109 - -
Cmo04g00206 388 SMART ring_2 188 228 IPR001841 -
Cmo04g00206 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 235 IPR013083 -
Cmo04g00206 388 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 6 332 - -
Cmo04g00206 388 ProSiteProfiles Zinc finger RING-type profile. 188 229 IPR001841 -
Cmo04g00206 388 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 6 332 - -
Cmo04g00206 388 MobiDBLite consensus disorder prediction 338 388 - -
Cmo04g00206 388 Pfam Protein of unknown function (DUF1117) 261 360 IPR010543 -
Cmo04g00206 388 Pfam Ring finger domain 187 229 IPR001841 -
Cmo04g00206 388 Pfam zinc-ribbon 9 40 IPR039525 GO:0061630
Cmo04g00206 388 SUPERFAMILY RING/U-box 168 234 - -
Cmo04g00206 388 CDD RING-H2_RNF126_like 188 229 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00206 Cmo15g00107 CCT
Cmo04g00206 Cmo04g03071 CCT
Cmo04g03071 Cmo04g00206 ECH
Cmo04g00206 Cmo15g00107 ECH
Cmo04g00206 Cmo04g03071 ECH
Cmo04g01246 Cmo04g00206 ECH
Cmo04g00206 Cmo04g01246 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00206 Cmo-Chr4:1021063 Cmo07g01160 Cmo-Chr7:6225444 6.92E-45 dispersed
Cmo14g00126 Cmo-Chr14:554519 Cmo04g00206 Cmo-Chr4:1021063 8.70E-87 wgd
Cmo02g00789 Cmo-Chr2:4874518 Cmo04g00206 Cmo-Chr4:1021063 1.16E-116 wgd
Cmo20g00422 Cmo-Chr20:1993643 Cmo04g00206 Cmo-Chr4:1021063 4.35E-113 wgd
Cmo04g00206 Cmo-Chr4:1021063 Cmo04g01246 Cmo-Chr4:6318459 0 wgd
Cmo04g00206 Cmo-Chr4:1021063 Cmo06g00286 Cmo-Chr6:1428072 8.61E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00206 - K11982 csv:101218245 577.785