Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00211 ATGGCTGCTATTCCTATTTCTCTTCTCGCCATTATTATCTCCCTGCTCTCTGTCGACGCTAGGATCCCTGGAGTTTACTCTGGCGGCCAGTGGCAGAGCGCTCATGCTACTTTTTATGGCGGCAGTGATGCCTCTGGAACCATGGGTGGTGCTTGTGGTTACGGAAACTTGTACAGCCAAGGTTATGGCGTGAATACCGCGGCGTTGAGCACTGCTTTGTTCAACAACGGTTTAAGCTGCGGAGCTTGCTTCGAGCTCAAGTGCGCTAACGATCCGCAGTGGTGCCATGCCGGCAGTCCGTCGATTTTCATCACCGCCACAAACTTTTGCCCTCCTAACTACGCTCTTCCGAGCGACAATGGAGGCTGGTGCAACCCTCCCCGTCCTCATTTCGACCTCGCAATGCCTATGTTCCTCAAGATCGCCGAGTACAGAGCCGGAATCGTTCCAGTCTCTTTTCGAAGTGAAGTTGGAAAATCGGGTACAGAGTATTACTTTTTCCGTGGAATCTTAGACCTAGTTATCCTGGCTCTGTTTCATGACTTCATCATCCTCGTGCCTCTCTTAAAGGAGAAATTATTGGACGCGATGGCACCCTCGAACATGCCATAG 612 51.31 MAAIPISLLAIIISLLSVDARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCANDPQWCHAGSPSIFITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFRSEVGKSGTEYYFFRGILDLVILALFHDFIILVPLLKEKLLDAMAPSNMP 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1056541 1057947 + CmoCh04G002110.1 Cmo04g00211 379186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00211 203 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 154 IPR007112 -
Cmo04g00211 203 PANTHER EXPANSIN 15 170 - -
Cmo04g00211 203 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Cmo04g00211 203 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Cmo04g00211 203 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Cmo04g00211 203 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Cmo04g00211 203 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Cmo04g00211 203 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Cmo04g00211 203 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Cmo04g00211 203 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Cmo04g00211 203 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Cmo04g00211 203 SUPERFAMILY Barwin-like endoglucanases 30 155 IPR036908 -
Cmo04g00211 203 Pfam Lytic transglycolase 66 153 IPR009009 -
Cmo04g00211 203 Gene3D - 19 156 IPR036908 -
Cmo04g00211 203 PANTHER EXPANSIN-A15 15 170 IPR002963 GO:0009664
Cmo04g00211 203 SMART dpbb_1 66 153 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00211 Cmo-Chr4:1056541 Cmo04g01748 Cmo-Chr4:8826880 1.28E-72 dispersed
Cmo01g00634 Cmo-Chr1:3246744 Cmo04g00211 Cmo-Chr4:1056541 5.47E-97 wgd
Cmo13g00120 Cmo-Chr13:694183 Cmo04g00211 Cmo-Chr4:1056541 7.34E-85 wgd
Cmo02g00797 Cmo-Chr2:4921039 Cmo04g00211 Cmo-Chr4:1056541 3.34E-95 wgd
Cmo20g00433 Cmo-Chr20:2031500 Cmo04g00211 Cmo-Chr4:1056541 4.95E-95 wgd
Cmo03g00435 Cmo-Chr3:4977128 Cmo04g00211 Cmo-Chr4:1056541 4.76E-94 wgd
Cmo04g00211 Cmo-Chr4:1056541 Cmo04g01251 Cmo-Chr4:6347642 3.75E-82 wgd
Cmo04g00211 Cmo-Chr4:1056541 Cmo04g02778 Cmo-Chr4:20041108 2.87E-88 wgd
Cmo04g00211 Cmo-Chr4:1056541 Cmo07g01042 Cmo-Chr7:5279087 3.08E-91 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00211 - - csv:101218950 304.679