Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00212 ATGGCTCCACAATCAGTTCGAATCCTCCACAACCAGTCCGAATCTCTGCCACTGACTGAAATGGGCAGTTTCACGGAGGTGCCATGCCGGAAACAGGGAGGAATTAGGTTCACAATCAACGGCTTCCGGTACTTCAACTTGGTACTGATCACAAACGTGGCAGGCGCAGGAGACATCGTGAAGGCGAGCGTGAAAGGCAGCAAAACAGAGTGGATGAGCATGAGCCGAAACTGGGGTCAAAACTGGCAATCAAACGCCGTTTTGGTAGGTCAGTCACTGTCGTTCAGGGTTACATCCAGTGACCGTCGCACCACCACTTCGTGGAACATCGTCCCTTCCAATTGGCAGTTTGGCCAGACCTTCACCGGCAAGAATTTCAGGGTCTGA 387 52.45 MAPQSVRILHNQSESLPLTEMGSFTEVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDRRTTTSWNIVPSNWQFGQTFTGKNFRV 128
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1058051 1059107 + CmoCh04G002120.1 Cmo04g00212 379187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00212 128 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 44 123 IPR007117 -
Cmo04g00212 128 SUPERFAMILY PHL pollen allergen 31 123 IPR036749 -
Cmo04g00212 128 Gene3D - 34 126 IPR036749 -
Cmo04g00212 128 PANTHER EXPANSIN-A15 16 127 IPR002963 GO:0009664
Cmo04g00212 128 PRINTS Expansin signature 80 101 IPR002963 GO:0009664
Cmo04g00212 128 PRINTS Expansin signature 109 125 IPR002963 GO:0009664
Cmo04g00212 128 PRINTS Expansin signature 33 45 IPR002963 GO:0009664
Cmo04g00212 128 PRINTS Expansin signature 45 66 IPR002963 GO:0009664
Cmo04g00212 128 PRINTS Expansin/Lol pI family signature 109 123 IPR007118 GO:0005576
Cmo04g00212 128 PRINTS Expansin/Lol pI family signature 71 85 IPR007118 GO:0005576
Cmo04g00212 128 PRINTS Expansin/Lol pI family signature 17 33 IPR007118 GO:0005576
Cmo04g00212 128 PANTHER EXPANSIN 16 127 - -
Cmo04g00212 128 Pfam Expansin C-terminal domain 35 112 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00212 Cmo-Chr4:1058051 Cmo20g00433 Cmo-Chr20:2031500 8.84E-65 dispersed
Cmo04g00212 Cmo-Chr4:1058051 Cmo02g00797 Cmo-Chr2:4921039 1.33E-68 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00212 - - csv:101218950 204.142