Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00222 ATGGCAGATTCTGAGGATATTCAGCCTCTCGTTTGTGATAATGGAACGGGAATGGTCAAGGCTGGGTTTGCTGGAGATGATGCTCCAAGAGCTGTGTTTCCTAGTATCGTAGGTCGTCCTCGCCACACTGGTGTGATGGTTGGGATGGGTCAGAAAGATGCTTATGTTGGTGATGAGGCTCAATCCAAGCGTGGTATTTTGACACTGAAATATCCAATTGAGCATGGTATTGTTAGTAACTGGGACGACATGGAAAAGATTTGGCATCATACTTTCTATAATGAGCTTCGTGTTGCACCAGAGGAACACCCAGTTCTCCTAACCGAGGCTCCTCTTAATCCGAAGGCCAATCGTGAGAAGATGACACAAATCATGTTTGAGACATTCAATACTCCAGCCATGTACGTGGCCATTCAAGCTGTTCTTTCCTTGTATGCAAGTGGACGTACAACTGGAATTGTGATGGACTCTGGTGATGGTGTCAGTCATACGGTTCCTATATACGAGGGGTATGCCCTCCCACACGCCATCCTTCGTCTTGATCTGGCGGGTCGTGATCTCACAGATAACCTGATGAAAATCCTCACTGAGCGTGGGTACTCTTTCACCACATCTGCAGAGCGGGAAATTGTGAGAGATATGAAAGAAAAGCTGGCATATATTGCCCTTGATTATGAACAGGAGATGGAGACATCCAAGACCAGCTCGTCTGTCGAAAAGAGCTATGAATTGCCTGATGGACAGGTGATCACCATCGGATCGGAGAGATTCAGATGTCCTGAAGTTCTTTTCCAACCTTCCATGATAGGAATGGAAGCAGCAGGCATTCATGAGACTACATACAACTCCATCATGAAGTGTGATGTGGATATCAGAAAGGACCTGTATGGCAACATTGTCCTATCTGGTGGTTCGACCATGTTCACCGGCATCGCTGATAGAATGAGCAAGGAAATCTCTGCCCTCGCCCCTAGCAGCATGAAGATAAAGGTCGTGGCGCCGCCTGAGAGAAAGTACAGTGTCTGGATTGGAGGATCCATCCTGGCATCCCTTAGCACCTTCCAACAGATGTGGATTGCCAAGGCAGAGTATGATGAATCTGGACCGTCGATTGTGCACAGGAAATGCTTCTAA 1134 47.27 MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQEMETSKTSSSVEKSYELPDGQVITIGSERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFTGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1113504 1116197 + CmoCh04G002220.1 Cmo04g00222 379197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00222 377 PRINTS Actin signature 28 37 IPR004000 -
Cmo04g00222 377 PRINTS Actin signature 51 62 IPR004000 -
Cmo04g00222 377 PRINTS Actin signature 63 85 IPR004000 -
Cmo04g00222 377 PRINTS Actin signature 117 130 IPR004000 -
Cmo04g00222 377 PRINTS Actin signature 142 161 IPR004000 -
Cmo04g00222 377 PRINTS Actin signature 238 254 IPR004000 -
Cmo04g00222 377 SMART actin_3 7 377 IPR004000 -
Cmo04g00222 377 Gene3D - 140 340 - -
Cmo04g00222 377 PANTHER ACTIN 1 376 IPR004000 -
Cmo04g00222 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cmo04g00222 377 SUPERFAMILY Actin-like ATPase domain 6 154 IPR043129 -
Cmo04g00222 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cmo04g00222 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cmo04g00222 377 Gene3D - 10 371 - -
Cmo04g00222 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cmo04g00222 377 PANTHER ACTIN-97 1 376 - -
Cmo04g00222 377 Pfam Actin 5 377 IPR004000 -
Cmo04g00222 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cmo04g00222 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00222 Cmo15g00397 CCT
Cmo04g00222 Cmo04g01263 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00222 Cmo-Chr4:1113504 Cmo15g00397 Cmo-Chr15:1826838 0 dispersed
Cmo04g00222 Cmo-Chr4:1113504 Cmo04g01263 Cmo-Chr4:6409646 0 wgd
Cmo04g00222 Cmo-Chr4:1113504 Cmo04g02766 Cmo-Chr4:19981604 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00222 K10355 - csv:101220611 744.577