Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00226 ATGGGGTTGTTTAGAGCTGGTTCTGCCTTGGCAAAGCTTGCCATTAGGAGGACTTTAGCACAGGGGGGAGGATCGTATGCTGCGAGATCACGGATTGTTTCGTCTCAGAGTCGATATTTTCATACTACGCTTTTTAAGCCTAAAGCTCAATCTGCACCTGTGCCTCGCCCTGTGCCTCTTTCGAAGCTAACTGATAGCTTTCTGGATGGGACGAGCAGTGTGTATTTGGAGGAGCTTCAAAGGGCTTGGGAGGCTGACCCCGACAGTGTTGATGAGTCGTGGGATAATTTCTTTAGAAATTTTGTGGGTCAGGCTGCAACATCTCCTGGTATTTCAGGTCAGACGATTCAAGAGAGCATGCGTTTGTTGTTGCTTGTCAGGGCTTACCAGGTTAATGGCCACATGAAAGCCAAGTTGGATCCCCTGAATTTGGAGGAAAGAGAAATCCCAGATGATCTTGACCCTGCTCTTTATGGATTTACAGATGCTGATCTTGATAGGGAGTTTTTCCTTGGTGTGTGGAGGATGGCTGGATTTTTGTCAGAAAATCGTCCAGTGCAGACTCTGAGATCGATATTGACCCGACTTGAGCAATCATACTGTGGAAGTATTGGATATGAATATATGCATATTGCAGATCGTAACAAATGTAACTGGTTGAGAGACAATATTGAGACCCCAACACCAATGCAGTACAATCGGCAGCGGCGTGAGGTGATTCTTGATCGTCTTATATGGAGCACGCAGTTTGAGAACTTCTTAGCCACTAAGTGGACTACAGCAAAAAGATTTGGGCTTGAAGGTGGCGAGACTTTAATTCCAGGGATGAAGGAGATGTTTGATAGGGCTGCAGACCTGGGAGTTGAGAGCATAGTGATTGGAATGCCTCACCGAGGAAGACTAAATGTTTTGGGAAATGTCGTTCGGAAGCCTCTGAGGCAGATCTTCAGTGAGTTTAGTGGTGGTACAAAGCCTGTGGATGAAGTTGGACTTTACACAGGAACTGGTGATGTCAAATATCACTTGGGTACTTCCTATGATCGACCAACTAGAGGTGGAAAACATATTCATCTTTCATTGGTTGCAAATCCAAGTCATTTGGAAGCTGTTGACCCAGTTGTTATTGGGAAAACTAGAGCAAAGCAATATTACTCCAACGATGTTGAAAGGATCAAGAATATGGGTATTTTGATCCACGGTGATGGTAGCTTTGCTGGACAAGGTGTAGTGTATGAAACTCTACATCTTAGTGCCCTTCCTAACTACACCACCGGAGGAACAATCCACATTGTTGTTAATAATCAAGTTGCTTTTACTACCGATCCAAGGGCTGGAAGATCATCACAATATTGCACTGATGTTGCTAAAGCTTTGGATGCTCCCATTCTCCATGTAAATGGTGATGACATGGAAGCAGTTGTCCATGTCTGTGAGCTTGCTGCAGAGTGGCGCCAGACCTTTCATTCGGATGTTGTTGTTGATTTGGTTTGTTATCGTCGGTTTGGACACAATGAAATCGACGAGCCATCCTTCACACAACCTAAGATGTACAAGGTCATAAAGAATCATCCTTCATCTCTTGAGATCTACCAGAAAAAACTCTTAGAATCTGGACAGGTGAGTCAGGAGGATATCAATCAGATACGTGAAAAGGTTAATAAAATCCTTAATGAAGAATTTTTGTCGAGCAAAGATTATGTACCAAAGAGAAGGGATTGGCTGTCAGCATATTGGTCTGGTTTCAAGTCACCTGAACAGATCTCAAGAGTTCGGAACACTGGAGTTAAACCAGAAATACTAAAGAATGTTGGAAAAGCAATTACTGTATTTCCAGATAATTTCAAGCCTCACAGAGCAGTAAAAAAGGTTTACGAACAAAGAGCACAGATGATTGAAACAGGGGAGGGCATTGACTGGGCACTTGGTGAAGCACTTGCTTTTGCAACTCTGCTTGTGGAAGGCAACCATGTCAGATTGAGTGGCCAAGATGTTGAGAGAGGTACCTTTAGTCATAGGCATTCGGTTGTGCATGACCAAGAGACAGGTGGAATCTACTGTCCTTTGGACCATGTTATCATGAATCAGGATGAGGAGCTGTTCACCGTTAGCAACAGCTCTCTCTCAGAGTTTGGAGTTCTTGGATTTGAGTTAGGTTACTCAATGGAAAATCCTAATTCATTGGTAATCTGGGAAGCGCAATTTGGTGATTTTTCAAATGGAGCTCAAGTTATCTTTGATCAATTCTTAAGCAGTGGTGAAGCGAAGTGGCTGCGGCAGACAGGGCTTGTTGTGCTGCTCCCCCATGGGTATGATGGACAGGGCCCTGAACATTCGAGTGCAAGAAAGAAAAGGTGCTGTGGCACGCACTTTAGTGAGGATATCTTTCTGAAGTGTGTTTTTCAATACACTGAAATGATGAGTGATGACAATCCTTTTGTTATTCCGGAGATGGATTCCACTCTTAGAAAGCAAATTCAGGAATGCAATTGGCAAGTTGTGAATGTTACCACTCCCGCCAACTATTTCCATGTTCTGCGAAGACAGATACACAGGGAGTTCCGTAAGCCTCTAGTTGTGATGGCCCCTAAGAATCTGCTTCGACACAAGGATTGTAGGTCTAATTTGTCTGAGTTCGATGATGTTCAAGGTCATCCAGGCTTTGACAAACAGGGAACCAGATTCAAACGCCTTATAAAGGACCAGAACAATCACTCTGATTGTGAAGAGGGTATTAGACGACTAGTCCTTTGCTCTGGAAAGGTATATTACGAACTTGATGATGAGCGAACTAAGGCAGATGCAAAGGACGTTGCAATATGTAGGGTCGAACAGCTTTGCCCCTTTCCTTATGATCTCATCCAGCGAGAGCTGAAGCGCTATCCAAATGCGGAGGTTGTCTGGTGCCAGGAGGAACCAATGAATATGGGTGCTTTTACCTACATTTCTCCACGTCTTGCCACTGCCATGAGGGCGCTTGGCAGAGGCAAAGCAGAAGATGTTAAATATGTGGGTCGTGCTCCATCGGCTTCTACAGCTACTGGATTCTATTCGTTCCACGTAAACGAACAAACCGAGCTTCTGAAGAAAGCATTGCAGCCTGAGCTCATCAAGAGTTCCTGA 3120 44.33 MGLFRAGSALAKLAIRRTLAQGGGSYAARSRIVSSQSRYFHTTLFKPKAQSAPVPRPVPLSKLTDSFLDGTSSVYLEELQRAWEADPDSVDESWDNFFRNFVGQAATSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLNLEEREIPDDLDPALYGFTDADLDREFFLGVWRMAGFLSENRPVQTLRSILTRLEQSYCGSIGYEYMHIADRNKCNWLRDNIETPTPMQYNRQRREVILDRLIWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPVDEVGLYTGTGDVKYHLGTSYDRPTRGGKHIHLSLVANPSHLEAVDPVVIGKTRAKQYYSNDVERIKNMGILIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTTDPRAGRSSQYCTDVAKALDAPILHVNGDDMEAVVHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKVIKNHPSSLEIYQKKLLESGQVSQEDINQIREKVNKILNEEFLSSKDYVPKRRDWLSAYWSGFKSPEQISRVRNTGVKPEILKNVGKAITVFPDNFKPHRAVKKVYEQRAQMIETGEGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVVHDQETGGIYCPLDHVIMNQDEELFTVSNSSLSEFGVLGFELGYSMENPNSLVIWEAQFGDFSNGAQVIFDQFLSSGEAKWLRQTGLVVLLPHGYDGQGPEHSSARKKRCCGTHFSEDIFLKCVFQYTEMMSDDNPFVIPEMDSTLRKQIQECNWQVVNVTTPANYFHVLRRQIHREFRKPLVVMAPKNLLRHKDCRSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNNHSDCEEGIRRLVLCSGKVYYELDDERTKADAKDVAICRVEQLCPFPYDLIQRELKRYPNAEVVWCQEEPMNMGAFTYISPRLATAMRALGRGKAEDVKYVGRAPSASTATGFYSFHVNEQTELLKKALQPELIKSS 1039
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1127045 1133322 + CmoCh04G002260.1 Cmo04g00226 379201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00226 1039 Pfam 2-oxoglutarate dehydrogenase N-terminus 65 103 IPR032106 -
Cmo04g00226 1039 PIRSF Oxoglu_dh_E1 60 1033 IPR011603 GO:0004591|GO:0006099|GO:0030976
Cmo04g00226 1039 Gene3D - 593 883 - -
Cmo04g00226 1039 CDD TPP_E1_OGDC_like 250 517 - -
Cmo04g00226 1039 Gene3D TPP helical domain 115 202 - -
Cmo04g00226 1039 Gene3D - 203 573 - -
Cmo04g00226 1039 TIGRFAM 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 67 1030 IPR011603 GO:0004591|GO:0006099|GO:0030976
Cmo04g00226 1039 PANTHER 2-OXOGLUTARATE DEHYDROGENASE 1 1037 IPR011603 GO:0004591|GO:0006099|GO:0030976
Cmo04g00226 1039 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 620 874 IPR029061 -
Cmo04g00226 1039 Pfam 2-oxoglutarate dehydrogenase C-terminal 890 1031 IPR031717 -
Cmo04g00226 1039 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 153 582 IPR029061 -
Cmo04g00226 1039 Gene3D - 886 1034 IPR042179 -
Cmo04g00226 1039 Pfam Dehydrogenase E1 component 245 566 IPR001017 GO:0016624
Cmo04g00226 1039 Pfam Transketolase, pyrimidine binding domain 636 869 IPR005475 -
Cmo04g00226 1039 PANTHER 2-OXOGLUTARATE DEHYDROGENASE, MITOCHONDRIAL-LIKE 1 1037 - -
Cmo04g00226 1039 SMART Transket_pyr_3 637 868 IPR005475 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00226 Cmo04g02749 CCT
Cmo04g00226 Cmo15g00423 CCT
Cmo04g00226 Cmo04g01270 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00423 Cmo-Chr15:1906659 Cmo04g00226 Cmo-Chr4:1127045 0 wgd
Cmo04g00226 Cmo-Chr4:1127045 Cmo04g01270 Cmo-Chr4:6434871 0 wgd
Cmo04g00226 Cmo-Chr4:1127045 Cmo04g02749 Cmo-Chr4:19903662 2.94E-29 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00226 K00164 - csv:101222022 2000.71