Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00227 ATGGAGCGTTTTGGAAGGCTTTTTGGATTGGCTAAGCCATATTTGATGGTCATTTTTGTGCAGTTTGGTTATGCTGGAATGACCATTCTTGTTAAGTCTGCCTTGGACAAAGGCATGAGCCCACATGTGTTTGTGGTTTATCGTTATGCTGTTGCTACTCTTGTCATTGCTCCTTTTGCCATTATCTTTGACAGGAAGGCGAGGACCAAGATGACCTTTTCAATACTCTGCAAGATTGTGTTGATGGGTTTATTGGAGCCAGTGATCGATCAAAACTTGTACACTACTGGTATGAAGCTCACAACAGCAACCTTTTCAGCTGCCATGGGCAATATTCTACCAGCTTTTTCTTTCCTCATGGCTTGGGCTTGCAGGCTTGAGAAAGTGAGTATTTTGAAAAGGGGAAGCCAAGCGAAGATCCTAGGAACCATAGTGACAGTAGGAGGAGCTATGATTATGACGTTCATAAGAGGGCCAATGTTGAATCTGCCATGGACAAAAGGGAGCCAGCCCTCTGCTTCTTCTGGTGGCTCTGCAACTCACCAGAGCCCACTTAAGGGCTCACTCATGATAGCAACTGGCTGCATTTGCTGGTCAGCTTTCATCACTCTTCAGGCGATTACATTGAAAGATTACCCGGCCGAGCTGTCGCTTACGGCATTGATATGTTTGGTGGGCACCATTGGAGGGTCTGGGGTGGCTTGGATCATTGAGAGGGGGAACCCTGCTGCTTGGGTTTTGCACTTTGACAGTCAGCTTCTGGCTGTTGTTTATTCCGGAGTAGTATGTACAGGGGTGACTTATTACCTTCAAGGAGTAGTGATGCAAACAAAAGGGCCTGTTTTTGTGACAGCATTCAGTCCTCTGGGCATGGTTCTTGTTGCAGTCATGAGCTCCTTCATATTGGGTGAGATGATGTTGTTGGGCAGGGTTCTTGGAGCAGTGGTCATTATCAGTGGCTTGTATTTGGTTCTGTGGGGCAAAAGCAAAGATGATCATGATTCAGCTAAATCTGAGTGTGATAAGATATCTCCTTGTGAGCAAAAAATGATCGGAAAGGATGAGTCTTTGAAGATGGTTCAATCAAATGAAGAATTTGTGGTGCTTCATCTTGCCCAAGAGGAGAAACATTGA 1134 45.41 MERFGRLFGLAKPYLMVIFVQFGYAGMTILVKSALDKGMSPHVFVVYRYAVATLVIAPFAIIFDRKARTKMTFSILCKIVLMGLLEPVIDQNLYTTGMKLTTATFSAAMGNILPAFSFLMAWACRLEKVSILKRGSQAKILGTIVTVGGAMIMTFIRGPMLNLPWTKGSQPSASSGGSATHQSPLKGSLMIATGCICWSAFITLQAITLKDYPAELSLTALICLVGTIGGSGVAWIIERGNPAAWVLHFDSQLLAVVYSGVVCTGVTYYLQGVVMQTKGPVFVTAFSPLGMVLVAVMSSFILGEMMLLGRVLGAVVIISGLYLVLWGKSKDDHDSAKSECDKISPCEQKMIGKDESLKMVQSNEEFVVLHLAQEEKH 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1137645 1140110 + CmoCh04G002270.1 Cmo04g00227 379202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00227 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 247 330 - -
Cmo04g00227 377 PANTHER WAT1-RELATED PROTEIN 9 340 - -
Cmo04g00227 377 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 155 - -
Cmo04g00227 377 Pfam EamA-like transporter family 186 325 IPR000620 GO:0016020|GO:0016021
Cmo04g00227 377 Pfam EamA-like transporter family 12 153 IPR000620 GO:0016020|GO:0016021
Cmo04g00227 377 PANTHER WAT1-RELATED PROTEIN 9 340 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00227 Cmo-Chr4:1137645 Cmo04g01271 Cmo-Chr4:6450155 0 dispersed
Cmo04g00227 Cmo-Chr4:1137645 Cmo04g00228 Cmo-Chr4:1143604 0 tandem
Cmo04g01883 Cmo-Chr4:9586137 Cmo04g00227 Cmo-Chr4:1137645 0 transposed
Cmo15g00424 Cmo-Chr15:1916632 Cmo04g00227 Cmo-Chr4:1137645 7.67E-127 wgd
Cmo03g00455 Cmo-Chr3:5080508 Cmo04g00227 Cmo-Chr4:1137645 2.37E-144 wgd
Cmo04g00227 Cmo-Chr4:1137645 Cmo04g02746 Cmo-Chr4:19879893 1.20E-146 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00227 - - cmos:111458151 609.757