Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00228 ATGGAGGGTTTTGGGAGGCTTTTTGAATTGGCTAAGCCATATTTAGTGGTCGTTTTTGTGCAGTTTGGCTATGCTGGAATGACCATTCTTGCTAAGTCTGCCTTGGACAAAGGCATGAGCCCACATGTCTTTGTGGTTTATCGTCATGCTGTTGCTACTCTTGTCATTGCTCCTTTTGCCATCATCTTTGACAGGAAGGCGAGGACGAAGATGACTTTTTCGATATTATGGAAGATTGTGTTGATGGGTTTATTGGAGCCAGTGATCGATCAAAACTTGTACTTTACTGGTATGAAGCTCACAACAGCAGCGTTTACCGCAGCCATGTGCAATATTCTACCAGCTTTTTCTTTCCTCATGGCTTGGGCTTGCAGGCTTGAGAAAGTGAGTATTTTGAAAAGGGGAAGCCAAGCGAAGATCCTAGGAACCATAGTGACAGTAGGAGGAGCTATGATTATGACGTTCATAAGAGGGCCAATGTTGAATCTGCCATGGACAAAAGGGAGCCAGCCCTCTGCTTCTTCTGGTGGCTCTGCAACTCACCAGAGCCCACTTAAGGGCTCACTCATGATAGCAACTGGCTGCATTTGCTGGTCAGCTTTCATCACTCTTCAGGCGATTACATTGAAAGAGTACCCGGTCGAGCTGTCGCTTACGGCATTGATATGCTTGGTGGGCACCATTGGAGGGTCTGGGGTGGCTTTGATCATTGAGAGGGGGAACCCTGCTGCTTGGGTTTTTCACTTTGACAGTCAGCTTCTGGCTGTTGTTTATGCTGGAGTAATATGTACAGGAGTGACTTATTACATTCAAGGAGTAGTGATGCAAACAAAAGGGCCTGTTTTTGTGACAGCATTCAGTCCTTTGAGCATGATTCTTGTTGCAATCATGAGCTCCTTCATCTTGGCTGAGATAATGTTCTTGGGAAGGGTTCTTGGAGCAGTGGCCATTATCAGTGGCTTGTATTTGGTTCTGTGGGGCAAAAGCAAAGATCAAGCTTCTGTTAAATTAGAGTGTGATAAGATAACACCTTGTGAGCAACAAATGGCTGGAAATGGTGAAGAATTTGTGGTGGTTAATGTTACCAAAGAGGACACAAATTGA 1104 45.11 MEGFGRLFELAKPYLVVVFVQFGYAGMTILAKSALDKGMSPHVFVVYRHAVATLVIAPFAIIFDRKARTKMTFSILWKIVLMGLLEPVIDQNLYFTGMKLTTAAFTAAMCNILPAFSFLMAWACRLEKVSILKRGSQAKILGTIVTVGGAMIMTFIRGPMLNLPWTKGSQPSASSGGSATHQSPLKGSLMIATGCICWSAFITLQAITLKEYPVELSLTALICLVGTIGGSGVALIIERGNPAAWVFHFDSQLLAVVYAGVICTGVTYYIQGVVMQTKGPVFVTAFSPLSMILVAIMSSFILAEIMFLGRVLGAVAIISGLYLVLWGKSKDQASVKLECDKITPCEQQMAGNGEEFVVVNVTKEDTN 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1143604 1145567 + CmoCh04G002280.1 Cmo04g00228 379203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00228 367 PANTHER WAT1-RELATED PROTEIN 9 340 - -
Cmo04g00228 367 SUPERFAMILY Multidrug resistance efflux transporter EmrE 247 330 - -
Cmo04g00228 367 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 155 - -
Cmo04g00228 367 Pfam EamA-like transporter family 186 325 IPR000620 GO:0016020|GO:0016021
Cmo04g00228 367 Pfam EamA-like transporter family 13 153 IPR000620 GO:0016020|GO:0016021
Cmo04g00228 367 PANTHER WAT1-RELATED PROTEIN 9 340 IPR030184 GO:0016021|GO:0022857
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00228 Cmo04g02748 CCT
Cmo04g00228 Cmo15g00424 CCT
Cmo04g01271 Cmo04g00228 ECH
Cmo04g02748 Cmo04g00228 ECH
Cmo04g00228 Cmo04g02748 ECH
Cmo04g00228 Cmo15g00424 ECH
Cmo04g00228 Cmo04g01271 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00228 Cmo-Chr4:1143604 Cmo04g01883 Cmo-Chr4:9586137 0 dispersed
Cmo04g02747 Cmo-Chr4:19890448 Cmo04g00228 Cmo-Chr4:1143604 5.91E-117 dispersed
Cmo04g00227 Cmo-Chr4:1137645 Cmo04g00228 Cmo-Chr4:1143604 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00228 - - cmos:111458151 668.692