Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00237 ATGGTGGGCTCTGAGGACTCTGCTACTGCTGGGGACGCAGTGCAGCTTTCTGGTGGAAATCGGAAATTGTTCTGGCGCTCGGCTTCTTGGTCTGCGTCACGGTCCTCCCTTCACCATCCTGATGTGAACAAAGATGGTGGAGACACCAGTGGGCATCTTGGAGATAGTAATGGAACAAGCCGAATTTTCCATTCTCCATTAACTCCAAGATCACAGCAGCATTGCAAAGCAAGGTCGTGTTTGCCTCCTTTAAAGCCTTTGTCGATAGCCCGGCGAAGCTTGGATGAGTGGCCCAAAGCGGGGTCGGACGACATAGGGGAGTGGCTGCAACCTCCTACTCCAAGTGGGAGAGGAAATGGGGAGAGGTTGAAACTTGATTTGTCGACAATTCAGAGAAATCCGGATAAGAATTGTGGGCTTGTGAAGAGGGATAAGATTGCTTTCTTTGACAAAGAGTGCTCGAAAGTGGCGGATCATGTATATCTTGGTGGAGATGCGGTTGCTCGAGATAGGGATATACTTAAACAGAACGGAATTACTCATGTGTTGAATTGTGTAGGATTCGTTTGCCCGGAGTACTTCAAAGATGATTTCGTGTACAGAACTTTGTGGTTGCAGGATAGCCCATCTGAGGATATCACTAGCATTCTGTATGATGTTTTTGACTACTTTGAAGATGTTAGAGAACAAAGTGGAAGGGTTTTTGTTCATTGTTGCCAGGGAGTATCCCGGTCAACGTCGTTGGTGATTGCCTATCTGATGTGGAGAGAAGGGCAGAGTTTTGATGATGCATTTCAATATGTAAAGGCAGCAAGAGGTATTGCTGACCCGAATATGGGTTTCGCTTGCCAATTATTACAGTGCCAAAAGAGGGTCCATGCTTTCCCTCTTAGCCCAAGTTCATTGTTGAGGATGTATAGAGTTGCCCCACACTCACCATATGATCCTTTGCATCTCGTCCCCAAAATGTTGAATGACCCTTCACCATCTGCACTCGATTCTAGAGGTGCTTTTATCATTCATATACCATCTGCCATATTTGTTTGGATTGGTAAGAACTGTAAAGCAATCATGGAAAGGGATGCAAGGGGGGCTGTTGTGCAGATTGTTCGGTATGAGAGAGTGCAAGGGCCTATATATGTAATTAAGGAAGGGGAAGAACCAATAAACTTTTGGGATTCCTTTGCAAACCTGTTACCTCTAATGGATAAATCCAACAGTAAAATCAATCCTGGGGAGTTAAAAGGTAAACCTTATCCAGGCGAGAGGAAAGTCGATTCCTATGATGTGGACTTTGAAATTTTTCAGAAGGCTATAACTGGTGGTTTTGTTCCTCCATTTCCTTCATCTGAGAACGAGCACGAAACCCATCTTCCTGTTAGAGAAAGCAATTGGAGTATGCTTAGGCGTAAGTTTGCCTCAGGAAACATGAAAGATTTCATATCAGCTCCTCGAGTATCTCTGTCTAGGGTCTATTCAGACTCGTCGATGATGGTGCATTTTTCTGCAAAATCCTCATCGCCTTCAACGTTTTCTTTGTCTTCATCATCTTCTTCACCTATCTATCTTTCTCCAGATTCCCTCTCTTCTGATTCAGGTTCAAGTTCAAGTTCAAGTTCCAAGTATTTTTCAGAGTCCTCTTTAGATTCTCCATCTGCATCTTCACCTTCAGCTCCAGCTTCTTCATCGCTGTCTAGTTTTTCTAACATGTCTCTTATCTCATCCAATAGTTCCTTAGAATCTGTGCCCAATGGTCCCGAAACTCGTGATGCAGTCCTCTTGGAATCAAGCTCTCACTCACTCTCATTCTCATCTAAAAAGTTCTCACCTTCTCTTGCAGAACGCCGAGGTAGTTCAAAGTCTCTGACATTGCCTACAATGCCCAGTAAAATCAGAGCAACAAATAGTGCCTCAAGATTTCTTGCCACTCAAGAAGATAGTAAGAGGAAAAACAAGAATTCTTTCTCTCTTAATGTATTAATTAATATGAAAAATGACTCAGAGCCTACAGATAGGGTTGCAAATGAACAGACAAGTTCCACTCAGAATTTCAAGAATTTTGAAAATGGAATCGACGTAAGGGTAGGTAGTGTGGCCTCGTGCCAGCAGGAAACTAAAGTTGATGCACAATCTACTAGTTCATGGAAAAGCTATCCCAAACCTTTTGAAAAAGGCATGCTATCCACCACTGTGTCTGGGAAGCAAGATGGTGAGTTTGTCCAACCTATGGTATACTGTTGGCCGGAATTAGAAAGGATTGCAGCTTTTGACACAAGTTACCTCAATTCTAAAGCTGCTTTAGCGATCTTCTCTCCAAGTAGGTATTTAGGCAAGAAGGATGACATGATGCTGTTTATGTGGGTAGGAAGTTCTTTTGACCATGATTTATCTCAGGTTCGAGTAAAGAGGGATAACGACTTGGTTGATTTAGAGAAGATAGACTGGGTTAAAGTTGGTCAATATATACTTACTGAAGTAGGTCTGCCAGAAAATGCAGAAATTAAGATTGGTTATTCTGGTCCAGGATCTTCAGCAATGGCACCTAAAGCTGACAGCAGCAAAAAGGCTGATCCTAAGGCGCAAGCCTTGAAGGCTGCCAAGGCAGTTAAGGCTGGTCCAACTTTCAAGCCGAAGGCTAAGAAGATCAGAACATCAGTTACATTCCATAGGCCAAAGACATTGAAGAAAGACAGGAATCCCAAATATCCTAGAATCAGTGCAACTCCAAGGAACAAGTTGGACCAATATCAAATTCTTAAATATCCACTGACCACCGAGTCAGCAATGAAGAAGATCGAGGATAATAACACCCTTGTTTTCATTGTTGATATTCGTGCAAACAAGAAAAAGATCAAGGATGCCGTGAAGAAGATGTATGATATTCAGACCAAGAAAGTGAACACTTTAATCAGACCCGATGGAACGAAGAAGGCGTACGTTAGGTTAACTCCGGATTACGATGCGTTAGATGTGGCGAACAAGATTGGTATCATCTAA 2997 42.94 MVGSEDSATAGDAVQLSGGNRKLFWRSASWSASRSSLHHPDVNKDGGDTSGHLGDSNGTSRIFHSPLTPRSQQHCKARSCLPPLKPLSIARRSLDEWPKAGSDDIGEWLQPPTPSGRGNGERLKLDLSTIQRNPDKNCGLVKRDKIAFFDKECSKVADHVYLGGDAVARDRDILKQNGITHVLNCVGFVCPEYFKDDFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQSGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRVAPHSPYDPLHLVPKMLNDPSPSALDSRGAFIIHIPSAIFVWIGKNCKAIMERDARGAVVQIVRYERVQGPIYVIKEGEEPINFWDSFANLLPLMDKSNSKINPGELKGKPYPGERKVDSYDVDFEIFQKAITGGFVPPFPSSENEHETHLPVRESNWSMLRRKFASGNMKDFISAPRVSLSRVYSDSSMMVHFSAKSSSPSTFSLSSSSSSPIYLSPDSLSSDSGSSSSSSSKYFSESSLDSPSASSPSAPASSSLSSFSNMSLISSNSSLESVPNGPETRDAVLLESSSHSLSFSSKKFSPSLAERRGSSKSLTLPTMPSKIRATNSASRFLATQEDSKRKNKNSFSLNVLINMKNDSEPTDRVANEQTSSTQNFKNFENGIDVRVGSVASCQQETKVDAQSTSSWKSYPKPFEKGMLSTTVSGKQDGEFVQPMVYCWPELERIAAFDTSYLNSKAALAIFSPSRYLGKKDDMMLFMWVGSSFDHDLSQVRVKRDNDLVDLEKIDWVKVGQYILTEVGLPENAEIKIGYSGPGSSAMAPKADSSKKADPKAQALKAAKAVKAGPTFKPKAKKIRTSVTFHRPKTLKKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 998
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1182084 1188944 - CmoCh04G002370.1 Cmo04g00237 379212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00237 998 MobiDBLite consensus disorder prediction 101 120 - -
Cmo04g00237 998 Pfam Ribosomal protein L23, N-terminal domain 859 907 IPR005633 -
Cmo04g00237 998 SMART dsp_5 152 291 IPR020422 GO:0006470|GO:0008138
Cmo04g00237 998 PANTHER MKPA PROTEIN 1 837 - -
Cmo04g00237 998 MobiDBLite consensus disorder prediction 50 75 - -
Cmo04g00237 998 Pfam Dual specificity phosphatase, catalytic domain 160 290 IPR000340 GO:0008138|GO:0016311
Cmo04g00237 998 ProSiteProfiles Dual specificity protein phosphatase domain profile. 152 294 IPR020422 GO:0006470|GO:0008138
Cmo04g00237 998 Pfam Ribosomal protein L23 918 979 IPR013025 GO:0003735|GO:0005840|GO:0006412
Cmo04g00237 998 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 211 272 IPR000387 GO:0016311|GO:0016791
Cmo04g00237 998 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 147 293 IPR029021 -
Cmo04g00237 998 ProSitePatterns Ribosomal protein L23 signature. 976 991 IPR001014 -
Cmo04g00237 998 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 1 837 - -
Cmo04g00237 998 SUPERFAMILY Actin depolymerizing proteins 299 400 - -
Cmo04g00237 998 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 916 991 IPR012678 GO:0003735|GO:0005840|GO:0006412
Cmo04g00237 998 ProSitePatterns Tyrosine specific protein phosphatases active site. 236 246 IPR016130 GO:0016311|GO:0016791
Cmo04g00237 998 Gene3D - 879 998 IPR012677 -
Cmo04g00237 998 Gene3D Protein tyrosine phosphatase superfamily 139 294 IPR029021 -
Cmo04g00237 998 CDD DSP 153 287 - -
Cmo04g00237 998 TIGRFAM uL23_arch: ribosomal protein uL23 922 998 IPR019985 GO:0003735|GO:0005840|GO:0006412
Cmo04g00237 998 Gene3D Severin 303 398 IPR029006 -
Cmo04g00237 998 MobiDBLite consensus disorder prediction 31 77 - -
Cmo04g00237 998 Hamap 50S ribosomal protein L23 [rplW]. 918 998 IPR013025 GO:0003735|GO:0005840|GO:0006412
Cmo04g00237 998 SMART VILL_6 301 398 IPR007122 GO:0051015
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00237 Cmo04g01282 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00004 Cmo-Chr4:14777 Cmo04g00237 Cmo-Chr4:1182084 9.66E-76 dispersed
Cmo04g00237 Cmo-Chr4:1182084 Cmo04g01870 Cmo-Chr4:9385055 0 dispersed
Cmo19g01082 Cmo-Chr19:9311595 Cmo04g00237 Cmo-Chr4:1182084 3.70E-12 dispersed
Cmo04g01282 Cmo-Chr4:6496236 Cmo04g00237 Cmo-Chr4:1182084 0 transposed
Cmo10g00017 Cmo-Chr10:117082 Cmo04g00237 Cmo-Chr4:1182084 2.81E-20 transposed
Cmo15g00427 Cmo-Chr15:1937626 Cmo04g00237 Cmo-Chr4:1182084 1.81E-78 wgd
Cmo04g00237 Cmo-Chr4:1182084 Cmo04g01280 Cmo-Chr4:6487541 1.29E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00237 - - csv:101223210 1364.36