Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g00237 | ATGGTGGGCTCTGAGGACTCTGCTACTGCTGGGGACGCAGTGCAGCTTTCTGGTGGAAATCGGAAATTGTTCTGGCGCTCGGCTTCTTGGTCTGCGTCACGGTCCTCCCTTCACCATCCTGATGTGAACAAAGATGGTGGAGACACCAGTGGGCATCTTGGAGATAGTAATGGAACAAGCCGAATTTTCCATTCTCCATTAACTCCAAGATCACAGCAGCATTGCAAAGCAAGGTCGTGTTTGCCTCCTTTAAAGCCTTTGTCGATAGCCCGGCGAAGCTTGGATGAGTGGCCCAAAGCGGGGTCGGACGACATAGGGGAGTGGCTGCAACCTCCTACTCCAAGTGGGAGAGGAAATGGGGAGAGGTTGAAACTTGATTTGTCGACAATTCAGAGAAATCCGGATAAGAATTGTGGGCTTGTGAAGAGGGATAAGATTGCTTTCTTTGACAAAGAGTGCTCGAAAGTGGCGGATCATGTATATCTTGGTGGAGATGCGGTTGCTCGAGATAGGGATATACTTAAACAGAACGGAATTACTCATGTGTTGAATTGTGTAGGATTCGTTTGCCCGGAGTACTTCAAAGATGATTTCGTGTACAGAACTTTGTGGTTGCAGGATAGCCCATCTGAGGATATCACTAGCATTCTGTATGATGTTTTTGACTACTTTGAAGATGTTAGAGAACAAAGTGGAAGGGTTTTTGTTCATTGTTGCCAGGGAGTATCCCGGTCAACGTCGTTGGTGATTGCCTATCTGATGTGGAGAGAAGGGCAGAGTTTTGATGATGCATTTCAATATGTAAAGGCAGCAAGAGGTATTGCTGACCCGAATATGGGTTTCGCTTGCCAATTATTACAGTGCCAAAAGAGGGTCCATGCTTTCCCTCTTAGCCCAAGTTCATTGTTGAGGATGTATAGAGTTGCCCCACACTCACCATATGATCCTTTGCATCTCGTCCCCAAAATGTTGAATGACCCTTCACCATCTGCACTCGATTCTAGAGGTGCTTTTATCATTCATATACCATCTGCCATATTTGTTTGGATTGGTAAGAACTGTAAAGCAATCATGGAAAGGGATGCAAGGGGGGCTGTTGTGCAGATTGTTCGGTATGAGAGAGTGCAAGGGCCTATATATGTAATTAAGGAAGGGGAAGAACCAATAAACTTTTGGGATTCCTTTGCAAACCTGTTACCTCTAATGGATAAATCCAACAGTAAAATCAATCCTGGGGAGTTAAAAGGTAAACCTTATCCAGGCGAGAGGAAAGTCGATTCCTATGATGTGGACTTTGAAATTTTTCAGAAGGCTATAACTGGTGGTTTTGTTCCTCCATTTCCTTCATCTGAGAACGAGCACGAAACCCATCTTCCTGTTAGAGAAAGCAATTGGAGTATGCTTAGGCGTAAGTTTGCCTCAGGAAACATGAAAGATTTCATATCAGCTCCTCGAGTATCTCTGTCTAGGGTCTATTCAGACTCGTCGATGATGGTGCATTTTTCTGCAAAATCCTCATCGCCTTCAACGTTTTCTTTGTCTTCATCATCTTCTTCACCTATCTATCTTTCTCCAGATTCCCTCTCTTCTGATTCAGGTTCAAGTTCAAGTTCAAGTTCCAAGTATTTTTCAGAGTCCTCTTTAGATTCTCCATCTGCATCTTCACCTTCAGCTCCAGCTTCTTCATCGCTGTCTAGTTTTTCTAACATGTCTCTTATCTCATCCAATAGTTCCTTAGAATCTGTGCCCAATGGTCCCGAAACTCGTGATGCAGTCCTCTTGGAATCAAGCTCTCACTCACTCTCATTCTCATCTAAAAAGTTCTCACCTTCTCTTGCAGAACGCCGAGGTAGTTCAAAGTCTCTGACATTGCCTACAATGCCCAGTAAAATCAGAGCAACAAATAGTGCCTCAAGATTTCTTGCCACTCAAGAAGATAGTAAGAGGAAAAACAAGAATTCTTTCTCTCTTAATGTATTAATTAATATGAAAAATGACTCAGAGCCTACAGATAGGGTTGCAAATGAACAGACAAGTTCCACTCAGAATTTCAAGAATTTTGAAAATGGAATCGACGTAAGGGTAGGTAGTGTGGCCTCGTGCCAGCAGGAAACTAAAGTTGATGCACAATCTACTAGTTCATGGAAAAGCTATCCCAAACCTTTTGAAAAAGGCATGCTATCCACCACTGTGTCTGGGAAGCAAGATGGTGAGTTTGTCCAACCTATGGTATACTGTTGGCCGGAATTAGAAAGGATTGCAGCTTTTGACACAAGTTACCTCAATTCTAAAGCTGCTTTAGCGATCTTCTCTCCAAGTAGGTATTTAGGCAAGAAGGATGACATGATGCTGTTTATGTGGGTAGGAAGTTCTTTTGACCATGATTTATCTCAGGTTCGAGTAAAGAGGGATAACGACTTGGTTGATTTAGAGAAGATAGACTGGGTTAAAGTTGGTCAATATATACTTACTGAAGTAGGTCTGCCAGAAAATGCAGAAATTAAGATTGGTTATTCTGGTCCAGGATCTTCAGCAATGGCACCTAAAGCTGACAGCAGCAAAAAGGCTGATCCTAAGGCGCAAGCCTTGAAGGCTGCCAAGGCAGTTAAGGCTGGTCCAACTTTCAAGCCGAAGGCTAAGAAGATCAGAACATCAGTTACATTCCATAGGCCAAAGACATTGAAGAAAGACAGGAATCCCAAATATCCTAGAATCAGTGCAACTCCAAGGAACAAGTTGGACCAATATCAAATTCTTAAATATCCACTGACCACCGAGTCAGCAATGAAGAAGATCGAGGATAATAACACCCTTGTTTTCATTGTTGATATTCGTGCAAACAAGAAAAAGATCAAGGATGCCGTGAAGAAGATGTATGATATTCAGACCAAGAAAGTGAACACTTTAATCAGACCCGATGGAACGAAGAAGGCGTACGTTAGGTTAACTCCGGATTACGATGCGTTAGATGTGGCGAACAAGATTGGTATCATCTAA | 2997 | 42.94 | MVGSEDSATAGDAVQLSGGNRKLFWRSASWSASRSSLHHPDVNKDGGDTSGHLGDSNGTSRIFHSPLTPRSQQHCKARSCLPPLKPLSIARRSLDEWPKAGSDDIGEWLQPPTPSGRGNGERLKLDLSTIQRNPDKNCGLVKRDKIAFFDKECSKVADHVYLGGDAVARDRDILKQNGITHVLNCVGFVCPEYFKDDFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQSGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRVAPHSPYDPLHLVPKMLNDPSPSALDSRGAFIIHIPSAIFVWIGKNCKAIMERDARGAVVQIVRYERVQGPIYVIKEGEEPINFWDSFANLLPLMDKSNSKINPGELKGKPYPGERKVDSYDVDFEIFQKAITGGFVPPFPSSENEHETHLPVRESNWSMLRRKFASGNMKDFISAPRVSLSRVYSDSSMMVHFSAKSSSPSTFSLSSSSSSPIYLSPDSLSSDSGSSSSSSSKYFSESSLDSPSASSPSAPASSSLSSFSNMSLISSNSSLESVPNGPETRDAVLLESSSHSLSFSSKKFSPSLAERRGSSKSLTLPTMPSKIRATNSASRFLATQEDSKRKNKNSFSLNVLINMKNDSEPTDRVANEQTSSTQNFKNFENGIDVRVGSVASCQQETKVDAQSTSSWKSYPKPFEKGMLSTTVSGKQDGEFVQPMVYCWPELERIAAFDTSYLNSKAALAIFSPSRYLGKKDDMMLFMWVGSSFDHDLSQVRVKRDNDLVDLEKIDWVKVGQYILTEVGLPENAEIKIGYSGPGSSAMAPKADSSKKADPKAQALKAAKAVKAGPTFKPKAKKIRTSVTFHRPKTLKKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII | 998 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 1182084 | 1188944 | - | CmoCh04G002370.1 | Cmo04g00237 | 379212 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g00237 | 998 | MobiDBLite | consensus disorder prediction | 101 | 120 | - | - | |
Cmo04g00237 | 998 | Pfam | Ribosomal protein L23, N-terminal domain | 859 | 907 | IPR005633 | - | |
Cmo04g00237 | 998 | SMART | dsp_5 | 152 | 291 | IPR020422 | GO:0006470|GO:0008138 | |
Cmo04g00237 | 998 | PANTHER | MKPA PROTEIN | 1 | 837 | - | - | |
Cmo04g00237 | 998 | MobiDBLite | consensus disorder prediction | 50 | 75 | - | - | |
Cmo04g00237 | 998 | Pfam | Dual specificity phosphatase, catalytic domain | 160 | 290 | IPR000340 | GO:0008138|GO:0016311 | |
Cmo04g00237 | 998 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 152 | 294 | IPR020422 | GO:0006470|GO:0008138 | |
Cmo04g00237 | 998 | Pfam | Ribosomal protein L23 | 918 | 979 | IPR013025 | GO:0003735|GO:0005840|GO:0006412 | |
Cmo04g00237 | 998 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 211 | 272 | IPR000387 | GO:0016311|GO:0016791 | |
Cmo04g00237 | 998 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 147 | 293 | IPR029021 | - | |
Cmo04g00237 | 998 | ProSitePatterns | Ribosomal protein L23 signature. | 976 | 991 | IPR001014 | - | |
Cmo04g00237 | 998 | PANTHER | PROTEIN-TYROSINE-PHOSPHATASE MKP1 | 1 | 837 | - | - | |
Cmo04g00237 | 998 | SUPERFAMILY | Actin depolymerizing proteins | 299 | 400 | - | - | |
Cmo04g00237 | 998 | SUPERFAMILY | Ribosomal proteins S24e, L23 and L15e | 916 | 991 | IPR012678 | GO:0003735|GO:0005840|GO:0006412 | |
Cmo04g00237 | 998 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 236 | 246 | IPR016130 | GO:0016311|GO:0016791 | |
Cmo04g00237 | 998 | Gene3D | - | 879 | 998 | IPR012677 | - | |
Cmo04g00237 | 998 | Gene3D | Protein tyrosine phosphatase superfamily | 139 | 294 | IPR029021 | - | |
Cmo04g00237 | 998 | CDD | DSP | 153 | 287 | - | - | |
Cmo04g00237 | 998 | TIGRFAM | uL23_arch: ribosomal protein uL23 | 922 | 998 | IPR019985 | GO:0003735|GO:0005840|GO:0006412 | |
Cmo04g00237 | 998 | Gene3D | Severin | 303 | 398 | IPR029006 | - | |
Cmo04g00237 | 998 | MobiDBLite | consensus disorder prediction | 31 | 77 | - | - | |
Cmo04g00237 | 998 | Hamap | 50S ribosomal protein L23 [rplW]. | 918 | 998 | IPR013025 | GO:0003735|GO:0005840|GO:0006412 | |
Cmo04g00237 | 998 | SMART | VILL_6 | 301 | 398 | IPR007122 | GO:0051015 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo04g00237 | Cmo04g01282 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g00004 | Cmo-Chr4:14777 | Cmo04g00237 | Cmo-Chr4:1182084 | 9.66E-76 | dispersed | |
Cmo04g00237 | Cmo-Chr4:1182084 | Cmo04g01870 | Cmo-Chr4:9385055 | 0 | dispersed | |
Cmo19g01082 | Cmo-Chr19:9311595 | Cmo04g00237 | Cmo-Chr4:1182084 | 3.70E-12 | dispersed | |
Cmo04g01282 | Cmo-Chr4:6496236 | Cmo04g00237 | Cmo-Chr4:1182084 | 0 | transposed | |
Cmo10g00017 | Cmo-Chr10:117082 | Cmo04g00237 | Cmo-Chr4:1182084 | 2.81E-20 | transposed | |
Cmo15g00427 | Cmo-Chr15:1937626 | Cmo04g00237 | Cmo-Chr4:1182084 | 1.81E-78 | wgd | |
Cmo04g00237 | Cmo-Chr4:1182084 | Cmo04g01280 | Cmo-Chr4:6487541 | 1.29E-88 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g00237 | - | - | csv:101223210 | 1364.36 |