Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00243 ATGGCCATTGAAGTTGCTGTCAAGGCTGCCGTTGGTGCACCCAATGTTATTGGAGACTGTCCTTTCTCTCAGAGGGTTCTCTTAACTTTAGAGGAGAAGAAAGTTCCTTACAAACTGCATCTCATCAATTTATCCGATAAACCCATTTGGTTTCTGGAAGTGAGCCCAGAAGGGAAGGTGCCTGTGGTGAAGTTTGATGACAAATGGGTATCTGATTCTGATGTCATTGTGGGGATTCTTGAGGAGAAGTACCCTGAGCCTTCTCTTGTTACTCCCCCTGAATTTTCTTCTGTGGGATCAAAGACAAATGGTGCTTTCGTGAAAATGTTGAAGAGCAAGGACCCGAATGATGGTTCGGAGCTGGCTTTGCTTGAAGAGTTGAAGGCGTTGGATGAGCATCTTAAGGCTCATGGTCCTTATGTTGCTGGAGAGAAGGTCACTGCTGTTGATTTGAGTCTGGCACCAAAGTTGTACAATCTCGATATTGCTCTTGGCCATTTCAAGAAGTGGATATTCCCTGTAAACTTGAACAGTTTATCCAAATACAAAGAGCTGCTTTTCGCTCGAGAATCTTTCATGAAGACAAAGGCTGCCCCAGAACACGTAATTTCTGGTTGGGAGCCCAAGGTGAATGCTGCTGCAGAACCTGTAATTTCTGATAGTGAGCCCAAGGTGAATGCTGCCGCAGAACCTGTAATTTCAGATAGTGAGCCCAAGGCGAATGCTGTCGCAGAACATGTAGTTTCTGATAGTGAGCCCAAGGCCATTGAGGTTGCTGTCAAGGCTGCTGTTGGTGCACTCGATGTTATTGGAGATTGCCCTTTCGCTCAGAGGGTTCTTTTGACTTTGGAGGAGAAGAAAGTTCCTTACAAATGGCATCTCATCGATTTATCCGACAAACCCAGTTGGTTCTTGGAAGTGAGCCCAGAAGGGAAGGTGCCGGTGGCCAAGATTGACGACAAATGGGTTCCCGACTCCGATGTCATTGTCGGGATTCTTGAGGAGAAGTATCCCGAGCCTTTTCTTGCGACTCCACCTGAATTTTCTTCTGTGGGATCAAAGATAAGTGGTGCTTTTGTAAAATTCTTGAAGAGTAAGGACCCGAACGATGGTTCGGAGCAGGCTTTGCTTGAAGAATTGAAGGCGTTGAACGAGCATCTCAAGGCTCATGGTCCTTATGTTGCTGGAGAAAAGGTTACCGCCGTTGATTTGAGTCTGGCACCGAAGCTTTACCATCTTGATGTCGCACTTGGCCATTTCAAGAAGTGGATTTTCCCTGAAAACTTAACCAGTTTATCCAAATACAAAGAGTTGCTTTTCGCTCGAGAATCGTTTGTGAAGACGAAGGCTGCCCCAGAACATGTAATTTCTGGTTGGGAGGCCAAAGTGAATGCTGCATGA 1401 46.04 MAIEVAVKAAVGAPNVIGDCPFSQRVLLTLEEKKVPYKLHLINLSDKPIWFLEVSPEGKVPVVKFDDKWVSDSDVIVGILEEKYPEPSLVTPPEFSSVGSKTNGAFVKMLKSKDPNDGSELALLEELKALDEHLKAHGPYVAGEKVTAVDLSLAPKLYNLDIALGHFKKWIFPVNLNSLSKYKELLFARESFMKTKAAPEHVISGWEPKVNAAAEPVISDSEPKVNAAAEPVISDSEPKANAVAEHVVSDSEPKAIEVAVKAAVGALDVIGDCPFAQRVLLTLEEKKVPYKWHLIDLSDKPSWFLEVSPEGKVPVAKIDDKWVPDSDVIVGILEEKYPEPFLATPPEFSSVGSKISGAFVKFLKSKDPNDGSEQALLEELKALNEHLKAHGPYVAGEKVTAVDLSLAPKLYHLDVALGHFKKWIFPENLTSLSKYKELLFARESFVKTKAAPEHVISGWEAKVNAA 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1212288 1215875 - CmoCh04G002430.1 Cmo04g00243 379218

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00243 466 Pfam Glutathione S-transferase, C-terminal domain 123 167 - -
Cmo04g00243 466 Pfam Glutathione S-transferase, C-terminal domain 371 424 - -
Cmo04g00243 466 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 10 88 IPR004045 -
Cmo04g00243 466 SUPERFAMILY Thioredoxin-like 19 87 IPR036249 -
Cmo04g00243 466 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 66 212 IPR010987 -
Cmo04g00243 466 SFLD Main (cytGST) 272 434 - -
Cmo04g00243 466 SUPERFAMILY GST C-terminal domain-like 103 210 IPR036282 -
Cmo04g00243 466 SUPERFAMILY Thioredoxin-like 270 340 IPR036249 -
Cmo04g00243 466 Gene3D Glutaredoxin 1 89 - -
Cmo04g00243 466 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 263 341 IPR004045 -
Cmo04g00243 466 CDD GST_N_family 20 77 - -
Cmo04g00243 466 Pfam Glutathione S-transferase, N-terminal domain 272 340 IPR004045 -
Cmo04g00243 466 Pfam Glutathione S-transferase, N-terminal domain 19 87 IPR004045 -
Cmo04g00243 466 SFLD Glutathione Transferase (cytosolic) 272 434 IPR040079 -
Cmo04g00243 466 SFLD Glutathione Transferase (cytosolic) 20 168 IPR040079 -
Cmo04g00243 466 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 319 465 IPR010987 -
Cmo04g00243 466 Gene3D - 90 212 - -
Cmo04g00243 466 Gene3D - 343 465 - -
Cmo04g00243 466 CDD GST_N_family 273 330 - -
Cmo04g00243 466 Gene3D Glutaredoxin 252 340 - -
Cmo04g00243 466 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 256 464 - -
Cmo04g00243 466 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 1 211 - -
Cmo04g00243 466 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 1 211 IPR044627 GO:0033355|GO:0045174|GO:0098869
Cmo04g00243 466 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 256 464 IPR044627 GO:0033355|GO:0045174|GO:0098869
Cmo04g00243 466 SUPERFAMILY GST C-terminal domain-like 355 462 IPR036282 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00243 K21888 DHAR; glutathione dehydrogenase/transferase [EC:1.8.5.1 2.5.1.18] - cmax:111483829 895.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00243 Cmo-Chr4:1212288 Cmo04g01285 Cmo-Chr4:6518889 6.14E-126 dispersed
Cmo04g00243 Cmo-Chr4:1212288 Cmo04g00245 Cmo-Chr4:1218654 6.30E-47 proximal
Cmo04g00242 Cmo-Chr4:1210152 Cmo04g00243 Cmo-Chr4:1212288 4.95E-106 tandem
Cmo04g00243 Cmo-Chr4:1212288 Cmo04g00244 Cmo-Chr4:1215990 2.24E-46 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo17g01082 CST 1 209 Glutathione S-transferase Gene Family AT4G02520 59.4 6.6e-65 244.6
Cmo08g00403 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.5 2.5e-64 242.7
Cmo08g00404 CST 5 221 Glutathione S-transferase Gene Family AT4G02520 54.5 1.0e-57 220.7
Cmo17g01082 CST 1 210 Glutathione S-transferase Gene Family AT2G02930 60.6 2.1e-66 249.6
Cmo08g00403 . 1 210 Glutathione S-transferase Gene Family AT2G02930 58.7 8.6e-65 244.2
Cmo08g00404 CST 5 222 Glutathione S-transferase Gene Family AT2G02930 55.2 7.8e-58 221.1
Cmo08g00403 . 5 206 Glutathione S-transferase Gene Family AT1G02950 54.2 9.1e-61 231.1
Cmo17g01082 CST 3 206 Glutathione S-transferase Gene Family AT1G02950 55.1 1.4e-58 223.8
Cmo08g00404 CST 6 218 Glutathione S-transferase Gene Family AT1G02950 51.9 2.0e-55 213.4
Cmo08g00403 . 1 210 Glutathione S-transferase Gene Family AT1G02930 58.6 2.9e-65 245.7
Cmo17g01082 CST 1 210 Glutathione S-transferase Gene Family AT1G02930 59.0 8.5e-65 244.2
Cmo08g00404 CST 5 222 Glutathione S-transferase Gene Family AT1G02930 53.2 1.7e-57 219.9
Cmo17g01082 CST 1 210 Glutathione S-transferase Gene Family AT1G02920 60.5 3.4e-66 248.8
Cmo08g00403 . 1 210 Glutathione S-transferase Gene Family AT1G02920 58.6 7.7e-66 247.7
Cmo08g00404 CST 5 222 Glutathione S-transferase Gene Family AT1G02920 54.6 7.0e-59 224.6
Cmo08g00403 . 1 215 Glutathione S-transferase Gene Family AT2G47730 58.3 1.9e-69 260.0
Cmo17g01082 CST 1 214 Glutathione S-transferase Gene Family AT2G47730 57.7 1.1e-64 244.2
Cmo08g00404 CST 4 225 Glutathione S-transferase Gene Family AT2G47730 53.4 3.0e-59 226.1
Cmo03g00394 . 3 216 Glutathione S-transferase Gene Family AT3G09270 52.1 8.2e-66 247.7
Cmo03g00395 . 3 213 Glutathione S-transferase Gene Family AT3G09270 52.4 3.8e-63 238.8
Cmo07g01074 . 3 213 Glutathione S-transferase Gene Family AT3G09270 51.9 2.2e-58 223.0
Cmo04g00338 . 4 219 Glutathione S-transferase Gene Family AT1G69930 51.2 2.7e-59 226.1
Cmo04g00338 . 1 216 Glutathione S-transferase Gene Family AT1G59670 52.1 2.1e-56 216.5
Cmo04g00338 . 1 216 Glutathione S-transferase Gene Family AT1G59700 54.3 8.3e-61 231.1
Cmo04g00338 . 6 223 Glutathione S-transferase Gene Family AT1G10370 60.9 1.7e-74 276.6
Cmo04g00339 . 6 216 Glutathione S-transferase Gene Family AT1G10370 55.5 3.2e-65 245.7
Cmo04g00338 . 5 223 Glutathione S-transferase Gene Family AT1G10360 58.4 1.1e-70 263.8
Cmo04g00339 . 5 216 Glutathione S-transferase Gene Family AT1G10360 52.0 4.7e-61 231.9
Cmo04g00688 . 1 205 Glutathione S-transferase Gene Family AT1G78380 72.2 1.6e-85 313.2
Cmo16g00499 . 1 187 Glutathione S-transferase Gene Family AT1G78380 61.5 2.2e-71 266.2
Cmo16g00500 . 1 105 Glutathione S-transferase Gene Family AT1G78380 66.7 1.3e-36 150.6
Cmo04g00688 . 1 206 Glutathione S-transferase Gene Family AT1G78370 65.5 7.0e-78 287.7
Cmo16g00499 . 1 188 Glutathione S-transferase Gene Family AT1G78370 58.9 5.9e-69 258.1
Cmo04g00687 . 8 213 Glutathione S-transferase Gene Family AT1G78370 51.5 1.8e-57 219.9
Cmo04g00688 . 1 212 Glutathione S-transferase Gene Family AT1G78340 62.0 1.1e-75 280.4
Cmo16g00499 . 1 189 Glutathione S-transferase Gene Family AT1G78340 61.4 4.8e-71 265.0
Cmo16g00500 . 1 96 Glutathione S-transferase Gene Family AT1G78340 68.8 3.5e-37 152.5
Cmo04g00688 . 1 206 Glutathione S-transferase Gene Family AT1G78320 52.9 3.0e-56 215.7
Cmo16g00499 . 1 184 Glutathione S-transferase Gene Family AT1G78320 50.7 4.2e-50 195.3
Cmo04g00688 . 1 206 Glutathione S-transferase Gene Family AT1G17180 66.0 4.0e-81 298.5
Cmo16g00499 . 1 187 Glutathione S-transferase Gene Family AT1G17180 63.9 4.3e-75 278.5
Cmo14g02022 . 129 284 Glutathione S-transferase Gene Family AT1G17180 51.6 1.3e-39 160.6
Cmo06g01186 . 8 162 Glutathione S-transferase Gene Family AT1G17180 50.6 1.2e-37 154.1
Cmo16g00500 . 1 105 Glutathione S-transferase Gene Family AT1G17180 64.8 2.1e-37 153.3
Cmo04g00688 . 1 206 Glutathione S-transferase Gene Family AT1G17190 57.5 7.8e-69 257.7
Cmo16g00499 . 3 190 Glutathione S-transferase Gene Family AT1G17190 53.6 1.3e-63 240.4
Cmo04g00688 . 3 205 Glutathione S-transferase Gene Family AT3G43800 55.1 2.4e-65 246.1
Cmo04g00688 . 3 205 Glutathione S-transferase Gene Family AT1G53680 58.0 1.2e-64 243.8
Cmo04g00687 . 4 220 Glutathione S-transferase Gene Family AT1G53680 51.8 4.4e-59 225.3
Cmo16g00499 . 4 185 Glutathione S-transferase Gene Family AT1G53680 52.7 3.1e-57 219.2
Cmo02g00647 . 51 221 Glutathione S-transferase Gene Family AT2G02390 65.5 6.8e-61 231.1
Cmo02g00645 . 50 217 Glutathione S-transferase Gene Family AT2G02390 66.1 2.9e-59 225.7
Cmo06g01161 . 60 226 Glutathione S-transferase Gene Family AT2G02390 53.9 2.3e-48 189.5
Cmo02g00647 . 10 220 Glutathione S-transferase Gene Family AT2G02380 62.6 4.8e-74 275.0
Cmo02g00645 . 9 215 Glutathione S-transferase Gene Family AT2G02380 61.4 9.4e-70 260.8
Cmo06g01161 . 17 225 Glutathione S-transferase Gene Family AT2G02380 55.0 1.4e-62 236.9
Cmo16g00640 . 1 237 Glutathione S-transferase Gene Family AT5G41210 68.8 9.5e-92 334.0
Cmo04g00779 . 1 229 Glutathione S-transferase Gene Family AT5G41210 69.4 5.8e-89 324.7
Cmo16g00640 . 1 237 Glutathione S-transferase Gene Family AT5G41240 67.5 1.1e-88 325.1
Cmo04g00779 . 1 229 Glutathione S-transferase Gene Family AT5G41240 67.7 1.2e-84 311.6
Cmo06g00337 . 10 236 Glutathione S-transferase Gene Family AT5G02780 68.9 3.6e-88 322.0
Cmo06g00338 . 4 232 Glutathione S-transferase Gene Family AT5G02780 68.0 9.3e-84 307.4
Cmo04g01303 . 76 295 Glutathione S-transferase Gene Family AT5G02780 64.4 9.0e-79 290.8
Cmo04g01303 . 39 293 Glutathione S-transferase Gene Family AT3G55040 59.0 2.1e-82 303.1
Cmo06g00337 . 5 237 Glutathione S-transferase Gene Family AT3G55040 62.2 6.9e-81 298.1
Cmo06g00338 . 3 230 Glutathione S-transferase Gene Family AT3G55040 57.2 1.1e-75 280.8
Cmo06g00337 . 10 236 Glutathione S-transferase Gene Family AT5G02790 69.2 5.4e-92 334.7
Cmo06g00338 . 4 232 Glutathione S-transferase Gene Family AT5G02790 69.1 2.0e-91 332.8
Cmo04g01303 . 62 295 Glutathione S-transferase Gene Family AT5G02790 62.1 8.6e-82 300.8
Cmo04g00243 . 1 211 Glutathione S-transferase Gene Family AT1G19570 67.5 3.9e-81 298.5
Cmo04g01285 . 1 211 Glutathione S-transferase Gene Family AT1G19570 65.1 1.8e-78 289.7
Cmo14g00834 . 66 274 Glutathione S-transferase Gene Family AT1G19570 61.4 7.8e-74 274.2
Cmo04g00242 . 32 242 Glutathione S-transferase Gene Family AT1G19570 62.3 1.6e-71 266.5
Cmo04g00245 . 1 98 Glutathione S-transferase Gene Family AT1G19570 76.5 4.3e-40 162.2
Cmo04g00243 . 256 465 Glutathione S-transferase Gene Family AT1G75270 73.0 2.5e-88 322.4
Cmo04g01285 . 1 212 Glutathione S-transferase Gene Family AT1G75270 70.9 1.8e-86 316.2
Cmo04g00242 . 32 243 Glutathione S-transferase Gene Family AT1G75270 65.3 1.3e-76 283.5
Cmo14g00834 . 66 274 Glutathione S-transferase Gene Family AT1G75270 63.3 2.4e-75 279.3
Cmo04g00245 . 1 98 Glutathione S-transferase Gene Family AT1G75270 77.6 1.5e-40 163.7
Cmo14g00834 . 55 276 Glutathione S-transferase Gene Family AT5G16710 77.0 1.2e-100 363.6
Cmo04g00243 . 256 463 Glutathione S-transferase Gene Family AT5G16710 60.1 1.0e-72 270.8
Cmo04g01285 . 3 210 Glutathione S-transferase Gene Family AT5G16710 59.1 1.3e-70 263.8
Cmo04g00242 . 20 241 Glutathione S-transferase Gene Family AT5G16710 52.3 3.4e-63 239.2
Cmo09g00759 CST 1 267 Glutathione S-transferase Gene Family AT1G77290 69.3 2.3e-107 386.0
Cmo01g01417 CST 1 270 Glutathione S-transferase Gene Family AT1G77290 67.8 2.8e-105 379.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003067 2 1 1 1 2 1 3 1 1 1 1 1 3 1 1 4 1 2 2 1 1 2 2 3 2 1 2 5 2 0 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00243 Cmo_Chr04 FPKM 0.870922 1.066812 2.867953 2.780666 50.954205 52.271027 43.906666 3.208247 2.849654 2.216263