Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00256 ATGGGAGCTTCAAACCTCCATTTTCTCATCTGGGTTCTTTGTGCTCTGTGTTCAAGATCATCTCTCTCATCAGGATTCTCTCCTGATGATAATTTTCTGATCGATTGTGGATCAACCTCCAATATAACAGTGGGAGGTCGTCTATTTCAACCTGATGGATTTTTCTCTGACAATCTTTCAAACCCGAATGGGAAATTTGTTTCCACTGCTAGCAAAGTTTCTAGTTCATCTCCACTGTTCTTATTCTCTCATCTCTTTCAAACTGCAAAAGTATTTGAAACAACTTCCGAATACAATTTCAAAATCAAGAAACAGGGCAGGCACTGGATCCGCCTCTACTTTTACCCTTTTGTTTATGAGAACTTCAATTTGAGTTTAGCCAAATTCTCAGTTTCTGCTCAAAATATCACCCTTCTCAAAGAGTTTCAGATCGAGAGTGGCTCGATAATCAAGGAGTATTCTCTGAATATCACTTCTAGTGATCTTGTTCTTACATTCACTCCCATGGTGAATTCATTTGCCTTCATCAATGCCTTGGAAGTTGTTTCTGTTCCTAATGAATTGATTCCTTTGGTTGTCCCTACTGTTGAGAAGATAGTAGAAAGTTTGGGGAATAGGGCATTGGAGACAGTTGCTAGAGTGAATATGGGCAACGAAACCGTGCCTCCGAGTAACGATACTCTCTCGCGCCTTTGGGTAGCAGATGGTCCATTCTTGATGCATAACAATCAGGCTGTTGCTGGGAGGTTTGTGTCAAATCTCACGAGAGTGAACATGACAACAGACTCTGAGATTATGGCTCCTCGTTCTGTGTATGGAACAGCAACTCAGTTAGGGGCTGAACCGGATGCGAATGCTAATATTAACGTATCATGGTCCTTCGATGTCGATCCAGGCTATGAATATCTGATTCGTTTTCACTTCTGTGATATTTTAGATCTTTCTTTTGGATCGCTGTTCTTTAATGTTTTCGTGAACTCGTGGATGGTTAAAGATCATCTTGATCTTAATAATGTCACTTCAGGCATCATAGGTGCACCTTATGTCCTGGACACCATAGCCAGTTCAATTGACAGCTCTAAATTCAAAATAAGTGTTGGCCCTTCCAGTTTTCATGAGTACTCAGCTGCAATCCTTAACGGACTCGAGATCATGAAAATAAGCGATTCTCGGGGGAGTCTTGATGAACTCCCCTTTGATATACACTCGAAGAATAGTTCCAATGTGAAAGTAGGTCTCATAGCAGGCTTGGTTGCTGGACTGGTTGCTGCTGTTTTGGTCACGCTCGTCGTCGTACTGTGTCGACGAAGAAGGAAAGCGGGGCTCGTCGGTTATTTGAAGGAAGAGGAAAATTTTGGTGTGAATGGAAGAGAAAGCAACTATGTCATTGGATCTGTTGGTTATAAATATCCTCTTGCATCCATTTTGGAAGCTACTGATCATTTTAGTGAAAGTTTAGTCGTTGGCCATGGCGGGTTTGGGAAGGTTTTCAAGGGAATGCTGAGGGACAACACGGAAGTGGCAGTGAAACGAGGGGCCTCGAAGTCTCAGCAGGGTCTTGCCGAGTTCCGAACCGAAATTGAGATGCTATCCCAGTTTCGCCACCGGCATTTGGTATCTCTGATCGGGTACTGCGACGAGCAAAATGAGATGATTATTATTTACGAATACATGGAAAAAGGGAGTCTCAAGGACCATTTGTATAGCTCAGAACTTCCAAGTTTAAGCTGGAAACAAAGGCTTGAGATATGCATTGGCTCAGCCAGAGGGCTTCACTATCTCCACACTGGCTCCACAAAGGCAATCATACACAGAGATGTCAAAACTGCAAACATTCTCCTAGATCAAAACTACATGGCTAAAGTTGCAGACTTCGGGCTCTCAAAAACTGGCCCCGAGTTCGATAAGACTCATGTTAGTACAGCAGTAAAAGGGAGCTTTGGCTATCTTGATCCCGAGTACTTAACAACGCAGCAGCTGACTGAGAAATCCGATGTGTACTCATTCGGCGTTGTTATGTTCGAAGTCCTTTGCGGTAGGCCTGTCATTGATCCATCTCTTCCAAGGGAAAAGGTGAATTTGATTGAGTGGGTAATGAAGAGGAAGGATAGAGATGAACTGGAGGCCATTGTAGACGCTTGTATTGTCAAGCAAATCAAGCTGGATTCTCTGAAAAAGTACGTAGAAACAGCTGAGAAATGCTTGGCGGAGTGCGGCATGGATCGCCCAACAATGGGAAACGTTCTGTGGAATCTGGAGTGTGCACTTCAGCTCCAGGGAGATGAAAGATCTAGCCATGGCAAGGAATCATCCTCACGAGCTGACCTTTCGAACCACTGGGAGGCAAGCGTATCGACCACTCAATTCAGCACGGGGAGTGCAGTCGATATCGCCGGTATCTCAATGAGTAAGGTGTTTGCTCAAATGGTGAGGGAAGATATGAGATAG 2448 43.91 MGASNLHFLIWVLCALCSRSSLSSGFSPDDNFLIDCGSTSNITVGGRLFQPDGFFSDNLSNPNGKFVSTASKVSSSSPLFLFSHLFQTAKVFETTSEYNFKIKKQGRHWIRLYFYPFVYENFNLSLAKFSVSAQNITLLKEFQIESGSIIKEYSLNITSSDLVLTFTPMVNSFAFINALEVVSVPNELIPLVVPTVEKIVESLGNRALETVARVNMGNETVPPSNDTLSRLWVADGPFLMHNNQAVAGRFVSNLTRVNMTTDSEIMAPRSVYGTATQLGAEPDANANINVSWSFDVDPGYEYLIRFHFCDILDLSFGSLFFNVFVNSWMVKDHLDLNNVTSGIIGAPYVLDTIASSIDSSKFKISVGPSSFHEYSAAILNGLEIMKISDSRGSLDELPFDIHSKNSSNVKVGLIAGLVAGLVAAVLVTLVVVLCRRRRKAGLVGYLKEEENFGVNGRESNYVIGSVGYKYPLASILEATDHFSESLVVGHGGFGKVFKGMLRDNTEVAVKRGASKSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDEQNEMIIIYEYMEKGSLKDHLYSSELPSLSWKQRLEICIGSARGLHYLHTGSTKAIIHRDVKTANILLDQNYMAKVADFGLSKTGPEFDKTHVSTAVKGSFGYLDPEYLTTQQLTEKSDVYSFGVVMFEVLCGRPVIDPSLPREKVNLIEWVMKRKDRDELEAIVDACIVKQIKLDSLKKYVETAEKCLAECGMDRPTMGNVLWNLECALQLQGDERSSHGKESSSRADLSNHWEASVSTTQFSTGSAVDIAGISMSKVFAQMVREDMR 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1274910 1277357 + CmoCh04G002560.1 Cmo04g00256 379231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00256 815 SMART serkin_6 482 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00256 815 PANTHER OS07G0166700 PROTEIN 17 807 IPR045272 GO:0004714|GO:0006468
Cmo04g00256 815 Pfam Malectin-like domain 34 387 IPR024788 -
Cmo04g00256 815 ProSitePatterns Serine/Threonine protein kinases active-site signature. 602 614 IPR008271 GO:0004672|GO:0006468
Cmo04g00256 815 ProSitePatterns Protein kinases ATP-binding region signature. 488 510 IPR017441 GO:0005524
Cmo04g00256 815 Gene3D - 31 185 - -
Cmo04g00256 815 Gene3D - 206 388 - -
Cmo04g00256 815 Pfam Protein tyrosine and serine/threonine kinase 487 698 IPR001245 GO:0004672|GO:0006468
Cmo04g00256 815 CDD STKc_IRAK 488 753 - -
Cmo04g00256 815 Gene3D Transferase(Phosphotransferase) domain 1 558 779 - -
Cmo04g00256 815 ProSiteProfiles Protein kinase domain profile. 482 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00256 815 SUPERFAMILY Protein kinase-like (PK-like) 463 752 IPR011009 -
Cmo04g00256 815 Gene3D Phosphorylase Kinase; domain 1 448 557 - -
Cmo04g00256 815 PANTHER RECEPTOR-LIKE PROTEIN KINASE HERK 1 17 807 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01294 Cmo04g00256 ECH
Cmo04g00256 Cmo04g01294 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00256 Cmo-Chr4:1274910 Cmo09g00879 Cmo-Chr9:4556558 0 dispersed
Cmo02g00846 Cmo-Chr2:5146479 Cmo04g00256 Cmo-Chr4:1274910 0 wgd
Cmo20g00478 Cmo-Chr20:2222862 Cmo04g00256 Cmo-Chr4:1274910 0 wgd
Cmo04g00256 Cmo-Chr4:1274910 Cmo04g01294 Cmo-Chr4:6573721 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74228 PF12819 Malectin_like 3.50E-32 CL0202 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00256 - - csv:101203398 1276.92