Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g00265 | ATGGGATGGTTTCTCTGTTCTGGAAGTTCAAATAAGAAGGAAAAGAAGCAGCAGGTTCACAAGGAAGACGATCCGATCCCATCAACTTCAGAAAAATTGATGGTAAAGGGGTCGTTTAATGGGAAGAACGAGGCTCTAAAAGATGGAAGTTCTGATCAGATTTCAGCACAAACAATTACATTCTCATTTCGAGAGTTGGCAGCTGCAACAAAGTATTTTAGAGCAGACTGTCTTTTAGGTGAAGGAGGTTTCGGTCAAGTATATAAAGGACGACTGGAGAGCATAAATCAGGTAGTTGCCATCAAGCAACTTGATCGAAATGGACTACAAGGAAACAGGGAGTTCCTCGTTGAAGTACTAATGTTAAGCCTACTCCATCATCCAAATCTTGTTAATTTAATTGGCTATTGTGCGGATGGTGATCAGAGACTTTTGGTTTATGAATACATGCCATTGGGATCTTTGGAAGACCATCTACATGATCTTCCACCCGATAATAAACGACTCGACTGGAATACAAGAATGAAAATAGCTGCTGGTGCTGCAAAGGGCTTAGAGTATTTACATGACAAAGCTAACCCCCCAGTTATATATCGTGATCTGAAATGCTCTAACATCCTGCTCGGTGAAGATTACCATCCCAAGTTATCCGATTTTGGCTTAGCAAAATTGGGCCCCGTGGGGGATAACACTCATGTGTCCACAAGAGTGATGGGAACTTATGGATACTGTGCTCCTGAGTATGCAATGACTGGCCAGCTCACTTTAAAATCAGATGTTTATAGCTTTGGAGTCGTTCTGCTTGAAATTATTACTGGCAGAAAAGCGATCGACAATTCAAGAGCCGCAGGGGAACATAATTTGGCACATCCCTTATTTAAAGACAGAAGGAAATTTTGGCAGATGGCTGATCCATTGCTCCAAGGACAGTACCCAGTCAGAGGCTTATACCAAGCTCTTGCAGTAGCTGCAATGTGTGTTCAGGAACAGCCTCATATGCGACCCCTTATTGCCGATGTCGTCACAGCCCTGACATACCTTGCCTCCCAAAAATTCGATCCCGAACCCCAGACAGTTCAAAACCCTCACAGTAGCTCGTCTACCCCTAGATCTTCTAGAAGAGAACTGTGA | 1131 | 43.32 | MGWFLCSGSSNKKEKKQQVHKEDDPIPSTSEKLMVKGSFNGKNEALKDGSSDQISAQTITFSFRELAAATKYFRADCLLGEGGFGQVYKGRLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLPPDNKRLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEDYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSRAAGEHNLAHPLFKDRRKFWQMADPLLQGQYPVRGLYQALAVAAMCVQEQPHMRPLIADVVTALTYLASQKFDPEPQTVQNPHSSSSTPRSSRREL | 376 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 1331189 | 1335515 | + | CmoCh04G002650.1 | Cmo04g00265 | 379240 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g00265 | 376 | MobiDBLite | consensus disorder prediction | 353 | 369 | - | - | |
Cmo04g00265 | 376 | ProSitePatterns | Protein kinases ATP-binding region signature. | 79 | 102 | IPR017441 | GO:0005524 | |
Cmo04g00265 | 376 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Cmo04g00265 | 376 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 196 | 208 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo04g00265 | 376 | SUPERFAMILY | Protein kinase-like (PK-like) | 61 | 367 | IPR011009 | - | |
Cmo04g00265 | 376 | PANTHER | OS07G0668900 PROTEIN | 11 | 373 | - | - | |
Cmo04g00265 | 376 | Pfam | Protein tyrosine and serine/threonine kinase | 78 | 342 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo04g00265 | 376 | Gene3D | Transferase(Phosphotransferase) domain 1 | 150 | 365 | - | - | |
Cmo04g00265 | 376 | Gene3D | Phosphorylase Kinase; domain 1 | 35 | 149 | - | - | |
Cmo04g00265 | 376 | ProSiteProfiles | Protein kinase domain profile. | 73 | 347 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo04g00265 | 376 | CDD | STKc_IRAK | 79 | 345 | - | - | |
Cmo04g00265 | 376 | PANTHER | SERINE/THREONINE-PROTEIN KINASE PBL27 | 11 | 373 | - | - | |
Cmo04g00265 | 376 | MobiDBLite | consensus disorder prediction | 353 | 376 | - | - | |
Cmo04g00265 | 376 | SMART | serkin_6 | 73 | 347 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo04g00265 | 376 | MobiDBLite | consensus disorder prediction | 13 | 29 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo04g01306 | Cmo04g00265 | ECH | |
Cmo04g00265 | Cmo04g01306 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g00265 | Cmo-Chr4:1331189 | Cmo14g00169 | Cmo-Chr14:757185 | 0 | dispersed | |
Cmo20g00489 | Cmo-Chr20:2288463 | Cmo04g00265 | Cmo-Chr4:1331189 | 1.12E-164 | wgd | |
Cmo04g00265 | Cmo-Chr4:1331189 | Cmo04g01306 | Cmo-Chr4:6640283 | 0 | wgd | |
Cmo04g00265 | Cmo-Chr4:1331189 | Cmo06g00339 | Cmo-Chr6:1641123 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74229 | PF07714 | PK_Tyr_Ser-Thr | 1.60E-46 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g00265 | - | - | csv:101221705 | 682.945 |