Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00265 ATGGGATGGTTTCTCTGTTCTGGAAGTTCAAATAAGAAGGAAAAGAAGCAGCAGGTTCACAAGGAAGACGATCCGATCCCATCAACTTCAGAAAAATTGATGGTAAAGGGGTCGTTTAATGGGAAGAACGAGGCTCTAAAAGATGGAAGTTCTGATCAGATTTCAGCACAAACAATTACATTCTCATTTCGAGAGTTGGCAGCTGCAACAAAGTATTTTAGAGCAGACTGTCTTTTAGGTGAAGGAGGTTTCGGTCAAGTATATAAAGGACGACTGGAGAGCATAAATCAGGTAGTTGCCATCAAGCAACTTGATCGAAATGGACTACAAGGAAACAGGGAGTTCCTCGTTGAAGTACTAATGTTAAGCCTACTCCATCATCCAAATCTTGTTAATTTAATTGGCTATTGTGCGGATGGTGATCAGAGACTTTTGGTTTATGAATACATGCCATTGGGATCTTTGGAAGACCATCTACATGATCTTCCACCCGATAATAAACGACTCGACTGGAATACAAGAATGAAAATAGCTGCTGGTGCTGCAAAGGGCTTAGAGTATTTACATGACAAAGCTAACCCCCCAGTTATATATCGTGATCTGAAATGCTCTAACATCCTGCTCGGTGAAGATTACCATCCCAAGTTATCCGATTTTGGCTTAGCAAAATTGGGCCCCGTGGGGGATAACACTCATGTGTCCACAAGAGTGATGGGAACTTATGGATACTGTGCTCCTGAGTATGCAATGACTGGCCAGCTCACTTTAAAATCAGATGTTTATAGCTTTGGAGTCGTTCTGCTTGAAATTATTACTGGCAGAAAAGCGATCGACAATTCAAGAGCCGCAGGGGAACATAATTTGGCACATCCCTTATTTAAAGACAGAAGGAAATTTTGGCAGATGGCTGATCCATTGCTCCAAGGACAGTACCCAGTCAGAGGCTTATACCAAGCTCTTGCAGTAGCTGCAATGTGTGTTCAGGAACAGCCTCATATGCGACCCCTTATTGCCGATGTCGTCACAGCCCTGACATACCTTGCCTCCCAAAAATTCGATCCCGAACCCCAGACAGTTCAAAACCCTCACAGTAGCTCGTCTACCCCTAGATCTTCTAGAAGAGAACTGTGA 1131 43.32 MGWFLCSGSSNKKEKKQQVHKEDDPIPSTSEKLMVKGSFNGKNEALKDGSSDQISAQTITFSFRELAAATKYFRADCLLGEGGFGQVYKGRLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLPPDNKRLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEDYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSRAAGEHNLAHPLFKDRRKFWQMADPLLQGQYPVRGLYQALAVAAMCVQEQPHMRPLIADVVTALTYLASQKFDPEPQTVQNPHSSSSTPRSSRREL 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1331189 1335515 + CmoCh04G002650.1 Cmo04g00265 379240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00265 376 MobiDBLite consensus disorder prediction 353 369 - -
Cmo04g00265 376 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Cmo04g00265 376 MobiDBLite consensus disorder prediction 1 32 - -
Cmo04g00265 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Cmo04g00265 376 SUPERFAMILY Protein kinase-like (PK-like) 61 367 IPR011009 -
Cmo04g00265 376 PANTHER OS07G0668900 PROTEIN 11 373 - -
Cmo04g00265 376 Pfam Protein tyrosine and serine/threonine kinase 78 342 IPR001245 GO:0004672|GO:0006468
Cmo04g00265 376 Gene3D Transferase(Phosphotransferase) domain 1 150 365 - -
Cmo04g00265 376 Gene3D Phosphorylase Kinase; domain 1 35 149 - -
Cmo04g00265 376 ProSiteProfiles Protein kinase domain profile. 73 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00265 376 CDD STKc_IRAK 79 345 - -
Cmo04g00265 376 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL27 11 373 - -
Cmo04g00265 376 MobiDBLite consensus disorder prediction 353 376 - -
Cmo04g00265 376 SMART serkin_6 73 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00265 376 MobiDBLite consensus disorder prediction 13 29 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01306 Cmo04g00265 ECH
Cmo04g00265 Cmo04g01306 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00265 Cmo-Chr4:1331189 Cmo14g00169 Cmo-Chr14:757185 0 dispersed
Cmo20g00489 Cmo-Chr20:2288463 Cmo04g00265 Cmo-Chr4:1331189 1.12E-164 wgd
Cmo04g00265 Cmo-Chr4:1331189 Cmo04g01306 Cmo-Chr4:6640283 0 wgd
Cmo04g00265 Cmo-Chr4:1331189 Cmo06g00339 Cmo-Chr6:1641123 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74229 PF07714 PK_Tyr_Ser-Thr 1.60E-46 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00265 - - csv:101221705 682.945