Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo04g00269 | ATGTTGAATCTTAACGATTTGATTATCAACTGCGATGAAACTTCGACGAATCGGACTGTAATGGAAGATTCTGAGACGTCGAATTCTTCTGTCGTGAATGCCGATGAGGTCTGCAACAGTAGAGATGAAGATTCCTCTGTTTTAATCTTCAATATTCTGAAAAGGGAAAATTCCGGCGGTGGTGGGGGTGGTGCGTCGCGGGAATTAGTGACTCAGGCGCTCTTTCCAGTGGCTGGAGGGTGGGGAGAAACTGGGTCTCCGGTTCCGAAGTCCCATTGGTTGAACCTGTCGTCGACTGGTGATTTCGGCGGCGAAGGCGTCGGTGGAGGAACTGCAGAGCTGAAAATTGTGCAGCAGAAACAGCAGCAGGTGAGGAAGAGCCGCCGTGGGCCGCGGTCCCGGAGTTCCCAGTACCGGGGAGTTACTTTTTACCGGCGCACAGGAAGATGGGAATCTCATATTTGGGATTGTGGGAAACAATTTGGGTTTGAATTTTCCCAGGTGGGTTCGACACTGCCCATGCTGCAGCAAGTAAATATCATATATTTTATATTAAAATTTATGGGTTTTGTTACAAGCAGGGCATATGATCGAGCAGCGATCAAATTTAGGGGAGTAAATGCAGATATAAACTTCAATATAAGCGACTACGATGAAGATATGAAGCAACTGAAAAATCTAAGCAAAGAAGAATTTGTGCACGTTCTTCGTCGACAAAGCACTGGATTTTCTCGTGGAGGATCGAAGCTGAGAGGATTATCTCTTCAGAAATATGGAAGATGGGAAACTCAAACGAGTCCACTTATGACGAAGAATGAAATCGAGGAAAGGTCGACAATGGTAGATGCAAACAATGGAGGCAATGGGCATAATCTTGATCTAAGCATTGGAGGAATTTTCAACTACCATTTAAGAAATTCTTCCCAAAACCTCAACATTCAAACACCAAAGAAAGAAAACAATGGTGGTGGTGGGTATGGTGTGGGTGGACAACAGCCGCATATTCCTCCTATGTGGTCTGGTTTTTGCTCCGGTTTTTTAGCAGATAATCAGGAAAGAAGAGAGAGGAGAAGCTACCCGTCAAAGACCCTTACGAGCTCGGGATGGCCAATGGCAATGCCGATATCGATGCCGATGTCGGTTCAAGAAAATGGGAGTAATGGAATAAGAGCAAGAGAAGAAGCTCATGTTTCCAAGAGTGCAGCATCATCAGGATTCTCTTCCTCTTCTAATTTTGGTTCACCTTATCCCCAAAATACCCCTCCCCTCCACAATACTCTCTGCCTTCCAACACCTTCCCCCAACATTTCTTGA | 1314 | 45.51 | MLNLNDLIINCDETSTNRTVMEDSETSNSSVVNADEVCNSRDEDSSVLIFNILKRENSGGGGGGASRELVTQALFPVAGGWGETGSPVPKSHWLNLSSTGDFGGEGVGGGTAELKIVQQKQQQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQFGFEFSQVGSTLPMLQQVNIIYFILKFMGFVTSRAYDRAAIKFRGVNADINFNISDYDEDMKQLKNLSKEEFVHVLRRQSTGFSRGGSKLRGLSLQKYGRWETQTSPLMTKNEIEERSTMVDANNGGNGHNLDLSIGGIFNYHLRNSSQNLNIQTPKKENNGGGGYGVGGQQPHIPPMWSGFCSGFLADNQERRERRSYPSKTLTSSGWPMAMPISMPMSVQENGSNGIRAREEAHVSKSAASSGFSSSSNFGSPYPQNTPPLHNTLCLPTPSPNIS | 437 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 1358706 | 1361898 | + | CmoCh04G002690.1 | Cmo04g00269 | 379244 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo04g00269 | 437 | Gene3D | AP2/ERF domain | 136 | 215 | IPR036955 | GO:0003700|GO:0006355 | |
| Cmo04g00269 | 437 | MobiDBLite | consensus disorder prediction | 400 | 437 | - | - | |
| Cmo04g00269 | 437 | SMART | rav1_2 | 137 | 219 | IPR001471 | GO:0003700|GO:0006355 | |
| Cmo04g00269 | 437 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED | 1 | 161 | - | - | |
| Cmo04g00269 | 437 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 192 | 416 | - | - | |
| Cmo04g00269 | 437 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 161 | - | - | |
| Cmo04g00269 | 437 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED | 192 | 416 | - | - | |
| Cmo04g00269 | 437 | MobiDBLite | consensus disorder prediction | 393 | 437 | - | - | |
| Cmo04g00269 | 437 | ProSiteProfiles | AP2/ERF domain profile. | 137 | 213 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo04g00269 | Cmo-Chr4:1358706 | Cmo02g00534 | Cmo-Chr2:3034021 | 4.47E-45 | dispersed | |
| Cmo14g00175 | Cmo-Chr14:787506 | Cmo04g00269 | Cmo-Chr4:1358706 | 8.17E-45 | wgd | |
| Cmo02g00859 | Cmo-Chr2:5223165 | Cmo04g00269 | Cmo-Chr4:1358706 | 7.31E-56 | wgd | |
| Cmo20g00493 | Cmo-Chr20:2325892 | Cmo04g00269 | Cmo-Chr4:1358706 | 1.80E-55 | wgd | |
| Cmo04g00269 | Cmo-Chr4:1358706 | Cmo04g01310 | Cmo-Chr4:6668332 | 1.62E-79 | wgd | |
| Cmo04g00269 | Cmo-Chr4:1358706 | Cmo06g00342 | Cmo-Chr6:1658640 | 1.25E-43 | wgd | |
| Cmo04g00269 | Cmo-Chr4:1358706 | Cmo07g00986 | Cmo-Chr7:4842641 | 3.89E-52 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo04g00269 | K09284 | - | csv:101204131 | 494.582 |