Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00271 ATGGCGGACCCTCCTACTAGTCCTGCCGGCGGTAGCCATGAGAGCGGCGGTGAGCAGAGCCCCCACACTGGCGGCGTTCGCGAGCAGGACCGTTACCTTCCGATCGCTAACATCAGTCGGATCATGAAGAAGGCCTTGCCTGCTAATGGCAAGATCGCCAAGGACGCTAAGGATACCGTCCAAGAATGCGTCTCCGAATTCATTAGCTTTATCACTAGCGAGGCGAGTGATAAGTGCCAGAAGGAGAAGAGGAAGACTATTAATGGCGATGATTTGCTTTGGGCCATGGCAACGTTGGGTTTCGAGGATTATATTGATCCGCTTAAGTCGTACCTTACTAGGTACCGTGAGTGTGATGCGAAAGGATCTTCGAGGGGTGGTGAAGAATCTGCTAAAAGAGATGCAGTTGGAGCCTTGCCTGGTCAAAATTCCCAGCAGTACTTGCAGCCAGGAGCATTGACCTACATTAACACTCAAGTCTCAGATATCCAAATTGAGCTCTGCCTCTGGAACAACCAGCCTTAG 525 51.43 MADPPTSPAGGSHESGGEQSPHTGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKSYLTRYRECDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQVSDIQIELCLWNNQP 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1368977 1374509 + CmoCh04G002710.1 Cmo04g00271 379246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00271 174 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Cmo04g00271 174 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Cmo04g00271 174 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Cmo04g00271 174 MobiDBLite consensus disorder prediction 1 30 - -
Cmo04g00271 174 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 154 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cmo04g00271 174 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Cmo04g00271 174 SUPERFAMILY Histone-fold 29 128 IPR009072 GO:0046982
Cmo04g00271 174 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 154 - -
Cmo04g00271 174 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cmo04g00271 174 Gene3D Histone, subunit A 22 151 IPR009072 GO:0046982
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00271 K08065 NFYB, HAP3; nuclear transcription Y subunit beta - csv:101223123 292.352
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00271 Cmo-Chr4:1368977 Cmo20g00682 Cmo-Chr20:3345325 6.33E-52 dispersed
Cmo14g00178 Cmo-Chr14:811623 Cmo04g00271 Cmo-Chr4:1368977 4.39E-80 wgd
Cmo04g00271 Cmo-Chr4:1368977 Cmo04g01312 Cmo-Chr4:6677894 7.75E-106 wgd
Cmo04g00271 Cmo-Chr4:1368977 Cmo06g00346 Cmo-Chr6:1673581 1.99E-79 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo06g00683 CST 10 178 CCAAT-HAP3 Transcription Factor Family AT5G47670 58.0 4.7e-48 188.7
Cmo16g01003 . 38 143 CCAAT-HAP3 Transcription Factor Family AT5G47670 82.1 2.4e-47 186.4
Cmo06g00682 . 51 157 CCAAT-HAP3 Transcription Factor Family AT5G47670 75.7 1.2e-43 174.1
Cmo20g00682 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 61.6 5.8e-38 155.2
Cmo02g00237 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 1.3e-37 154.1
Cmo06g00683 CST 59 197 CCAAT-HAP3 Transcription Factor Family AT1G21970 66.0 2.0e-49 193.4
Cmo16g01003 . 26 185 CCAAT-HAP3 Transcription Factor Family AT1G21970 61.8 9.7e-49 191.0
Cmo06g00682 . 38 179 CCAAT-HAP3 Transcription Factor Family AT1G21970 62.0 2.6e-46 183.0
Cmo20g00682 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 85.3 5.6e-56 214.5
Cmo02g00237 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 84.4 9.5e-56 213.8
Cmo06g00687 . 1 150 CCAAT-HAP3 Transcription Factor Family AT4G14540 70.4 3.2e-51 198.7
Cmo16g01006 CST 1 120 CCAAT-HAP3 Transcription Factor Family AT4G14540 77.7 6.2e-47 184.5
Cmo16g00726 . 24 130 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 8.0e-47 184.1
Cmo04g00847 . 32 138 CCAAT-HAP3 Transcription Factor Family AT4G14540 84.3 4.4e-45 178.3
Cmo04g00271 . 14 132 CCAAT-HAP3 Transcription Factor Family AT4G14540 69.7 1.4e-43 173.3
Cmo06g00346 . 22 115 CCAAT-HAP3 Transcription Factor Family AT4G14540 87.2 1.9e-43 172.9
Cmo14g00178 . 22 115 CCAAT-HAP3 Transcription Factor Family AT4G14540 87.2 1.9e-43 172.9
Cmo04g01312 . 409 530 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.9 4.1e-43 171.8
Cmo17g01087 . 47 142 CCAAT-HAP3 Transcription Factor Family AT4G14540 74.0 8.9e-38 154.1
Cmo04g00271 . 1 117 CCAAT-HAP3 Transcription Factor Family AT2G38880 82.9 2.5e-50 195.7
Cmo06g00346 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 4.1e-48 188.3
Cmo14g00178 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 4.1e-48 188.3
Cmo04g01312 . 399 515 CCAAT-HAP3 Transcription Factor Family AT2G38880 77.8 9.0e-48 187.2
Cmo06g00687 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 73.0 1.1e-42 170.2
Cmo02g00237 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 2.5e-42 169.1
Cmo20g00682 . 20 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 80.9 4.3e-42 168.3
Cmo04g00847 . 16 125 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.7 1.7e-41 166.4
Cmo16g00726 . 22 117 CCAAT-HAP3 Transcription Factor Family AT2G38880 78.1 8.2e-41 164.1
Cmo16g01006 CST 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 69.4 4.1e-40 161.8
Cmo17g01087 . 35 138 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 7.7e-39 157.5
Cmo17g01087 . 46 142 CCAAT-HAP3 Transcription Factor Family AT2G47810 85.6 1.4e-43 173.3
Cmo06g00687 . 19 126 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.3 1.1e-40 163.7
Cmo02g00237 . 18 127 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.3 2.1e-39 159.5
Cmo20g00682 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.0 4.7e-39 158.3
Cmo16g00726 . 27 135 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 5.2e-38 154.8
Cmo16g01006 CST 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 74.0 6.8e-38 154.5
Cmo04g00847 . 35 130 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.9 4.4e-37 151.8
Cmo14g00178 . 1 171 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.4 4.7e-61 231.5
Cmo06g00346 . 1 158 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.7 2.7e-56 215.7
Cmo04g01312 . 399 564 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.4 2.3e-55 212.6
Cmo04g00271 . 7 145 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.4 1.6e-53 206.5
Cmo02g00237 . 6 125 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.2 1.1e-44 177.2
Cmo20g00682 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.7 4.0e-44 175.3
Cmo06g00687 . 9 127 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.6 4.2e-41 165.2
Cmo16g00726 . 26 131 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 5.4e-41 164.9
Cmo16g01006 CST 6 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.5 1.6e-40 163.3
Cmo04g00847 . 34 127 CCAAT-HAP3 Transcription Factor Family AT2G37060 77.7 1.5e-38 156.8
Cmo17g01087 . 46 148 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.9 1.4e-36 150.2
Cmo16g00726 . 14 128 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.0 2.2e-44 176.4
Cmo20g00682 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 5.0e-44 175.3
Cmo02g00237 . 22 117 CCAAT-HAP3 Transcription Factor Family AT2G13570 85.4 1.5e-43 173.7
Cmo04g00847 . 22 136 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.1 9.4e-43 171.0
Cmo06g00687 . 8 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 73.8 1.0e-41 167.5
Cmo14g00178 . 7 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 69.7 1.8e-41 166.8
Cmo06g00346 . 7 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 69.7 2.3e-41 166.4
Cmo16g01006 CST 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 78.1 9.7e-40 161.0
Cmo04g01312 . 425 519 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.7 3.7e-39 159.1
Cmo04g00271 . 27 121 CCAAT-HAP3 Transcription Factor Family AT2G13570 73.7 3.7e-39 159.1
Cmo17g01087 . 47 147 CCAAT-HAP3 Transcription Factor Family AT2G13570 72.3 1.8e-38 156.8
Cmo20g00682 . 1 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 78.6 1.7e-51 199.9
Cmo02g00237 . 1 121 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.2 4.9e-51 198.4
Cmo06g00687 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.8 2.7e-49 192.6
Cmo16g01006 CST 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.8 1.3e-48 190.3
Cmo16g00726 . 22 127 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 1.2e-44 177.2
Cmo04g01312 . 425 535 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.8 6.4e-43 171.4
Cmo04g00271 . 27 137 CCAAT-HAP3 Transcription Factor Family AT5G47640 70.9 6.4e-43 171.4
Cmo04g00847 . 30 135 CCAAT-HAP3 Transcription Factor Family AT5G47640 78.3 6.4e-43 171.4
Cmo14g00178 . 11 124 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.1 7.0e-42 167.9
Cmo06g00346 . 11 124 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.1 9.2e-42 167.5
Cmo17g01087 . 47 143 CCAAT-HAP3 Transcription Factor Family AT5G47640 78.4 4.3e-39 158.7
Cmo14g00178 . 12 171 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 2.0e-59 226.1
Cmo06g00346 . 12 157 CCAAT-HAP3 Transcription Factor Family AT3G53340 77.8 3.2e-57 218.8
Cmo04g00271 . 12 167 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.9 2.0e-54 209.5
Cmo04g01312 . 410 563 CCAAT-HAP3 Transcription Factor Family AT3G53340 70.2 3.3e-54 208.8
Cmo02g00237 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.3 3.7e-45 178.7
Cmo20g00682 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 70.8 8.2e-45 177.6
Cmo06g00687 . 9 127 CCAAT-HAP3 Transcription Factor Family AT3G53340 70.2 2.2e-42 169.5
Cmo16g00726 . 15 119 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 9.4e-41 164.1
Cmo16g01006 CST 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.6 6.1e-40 161.4
Cmo04g00847 . 23 127 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.3 3.0e-39 159.1
Cmo17g01087 . 46 148 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.9 2.8e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000266 8 6 6 8 9 3 3 3 3 2 3 3 6 4 4 6 3 10 6 3 4 4 4 3 4 3 2 16 9 4 152
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9517 PF00808 CBFD_NFYB_HMF 5.80E-28 CL0012 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00271 Cmo_Chr04 FPKM 2.393701 3.416754 2.369227 3.477256 5.256151 5.01313 3.589911 7.211433 4.814944 3.794481