Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00271 ATGGCGGACCCTCCTACTAGTCCTGCCGGCGGTAGCCATGAGAGCGGCGGTGAGCAGAGCCCCCACACTGGCGGCGTTCGCGAGCAGGACCGTTACCTTCCGATCGCTAACATCAGTCGGATCATGAAGAAGGCCTTGCCTGCTAATGGCAAGATCGCCAAGGACGCTAAGGATACCGTCCAAGAATGCGTCTCCGAATTCATTAGCTTTATCACTAGCGAGGCGAGTGATAAGTGCCAGAAGGAGAAGAGGAAGACTATTAATGGCGATGATTTGCTTTGGGCCATGGCAACGTTGGGTTTCGAGGATTATATTGATCCGCTTAAGTCGTACCTTACTAGGTACCGTGAGTGTGATGCGAAAGGATCTTCGAGGGGTGGTGAAGAATCTGCTAAAAGAGATGCAGTTGGAGCCTTGCCTGGTCAAAATTCCCAGCAGTACTTGCAGCCAGGAGCATTGACCTACATTAACACTCAAGTCTCAGATATCCAAATTGAGCTCTGCCTCTGGAACAACCAGCCTTAG 525 51.43 MADPPTSPAGGSHESGGEQSPHTGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKSYLTRYRECDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQVSDIQIELCLWNNQP 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1368977 1374509 + CmoCh04G002710.1 Cmo04g00271 379246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00271 174 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Cmo04g00271 174 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Cmo04g00271 174 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Cmo04g00271 174 MobiDBLite consensus disorder prediction 1 30 - -
Cmo04g00271 174 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 154 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cmo04g00271 174 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Cmo04g00271 174 SUPERFAMILY Histone-fold 29 128 IPR009072 GO:0046982
Cmo04g00271 174 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 154 - -
Cmo04g00271 174 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cmo04g00271 174 Gene3D Histone, subunit A 22 151 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00271 Cmo-Chr4:1368977 Cmo20g00682 Cmo-Chr20:3345325 6.33E-52 dispersed
Cmo14g00178 Cmo-Chr14:811623 Cmo04g00271 Cmo-Chr4:1368977 4.39E-80 wgd
Cmo04g00271 Cmo-Chr4:1368977 Cmo04g01312 Cmo-Chr4:6677894 7.75E-106 wgd
Cmo04g00271 Cmo-Chr4:1368977 Cmo06g00346 Cmo-Chr6:1673581 1.99E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9517 PF00808 CBFD_NFYB_HMF 5.80E-28 CL0012 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00271 K08065 - csv:101223123 292.352