Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00277 ATGGCTTACGTGGCCAAATGTACGAGCTCTCCACCAACGCCGACCACTCTTCCTAACCCCCCCTTATCTTCCTCCGCCGCCGCCGCCACCACCAACTTCGTGTCGCCTCCCACTTCTCAACAGTCGTCGACGCCGGTCGCGGTGGTTCTCAGCCCCTGCGCCGCCTGCAAGATCCTCCGGCGCCGCTGCATCGAGAAGTGCGTTTTGGCTCCTTATTTTCCTCCGACGGAGCCCCTCAAATTCACCATTGCTCATAGAGTGTTTGGAGCTAGCAATATCATCAAGTTCTTGCAAGAGCTGCCGGAATGCCAAAGAACAGATGCAGTGAGCAGCATGGTGTATGAAGCAAATGCAAGGGTGCGAGATCCGGTGTACGGCAGCGCGGGCGCAATTTGCCAGCTGCAAACGCAAGTGAGCGAGTTGCAGGCACAGCTAGCCAAGGCCAGGGCAGAGGTAGCCAATATGCAGCAACAGCAAGCCAACTTATTAGCGTTGATTTGCATGGAAATGAAGCAATCAGCGGAGCCCCTTTGGGCATCGCACCTTGCGGATACCACTTGCTTCCTTGACGATGCTACTCTTAGCGCACCGTGGGAGCCGCTCTGGACATGA 612 56.54 MAYVAKCTSSPPTPTTLPNPPLSSSAAAATTNFVSPPTSQQSSTPVAVVLSPCAACKILRRRCIEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARVRDPVYGSAGAICQLQTQVSELQAQLAKARAEVANMQQQQANLLALICMEMKQSAEPLWASHLADTTCFLDDATLSAPWEPLWT 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1399587 1400664 + CmoCh04G002770.1 Cmo04g00277 379252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00277 203 MobiDBLite consensus disorder prediction 1 24 - -
Cmo04g00277 203 Coils Coil 131 165 - -
Cmo04g00277 203 ProSiteProfiles LOB domain profile. 51 152 IPR004883 -
Cmo04g00277 203 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 41 178 - -
Cmo04g00277 203 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 41 178 - -
Cmo04g00277 203 Pfam Lateral organ boundaries (LOB) domain 52 149 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00277 Cmo-Chr4:1399587 Cmo13g00196 Cmo-Chr13:1406230 6.81E-70 dispersed
Cmo01g00564 Cmo-Chr1:2827611 Cmo04g00277 Cmo-Chr4:1399587 1.79E-70 wgd
Cmo15g00444 Cmo-Chr15:2017329 Cmo04g00277 Cmo-Chr4:1399587 2.19E-59 wgd
Cmo02g00870 Cmo-Chr2:5297039 Cmo04g00277 Cmo-Chr4:1399587 1.04E-78 wgd
Cmo20g00502 Cmo-Chr20:2396456 Cmo04g00277 Cmo-Chr4:1399587 3.42E-81 wgd
Cmo04g00277 Cmo-Chr4:1399587 Cmo04g01315 Cmo-Chr4:6708105 8.17E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9518 PF03195 LOB 2.10E-39 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00277 - - bhj:120081845 311.227