Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00296 ATGGATCTGGAAAGTGGGGTTCGTAGTGAAAAGAATGCCAAGAAAGAGTCATGGAAGGCGGTTTTGATGATGGCTTATCAGAGTCTTGGGGTTGTCTATGGCGAGTTGGGTACTTCGCCTCTGTATGTCTATAAGAACACTTTTGCAGAAGAAGATATCGGTCATTCGAAGAGCAACGATGAGATTTATGGCGTTTTGTCCTTTGTTTTTTGGACCCTCACCATTGTTCCTTTGCTCAAGTACATATTTATCGTTCTTAAAGCCGATGATAATGGCGAGGGAGGGACATTTGCTCTGTATTCGTTACTATGTCGACATGCCAGAGTTAACGCATTACCCAATACCCAGTTGGCTGATTCTGAACTCACTGATTTCAAGATGGATGTTCTTGGTCCACAATCTCAAGAAAGTTTTGGATTCAAACTCAAATCTGCCTTAGAAAAGCGTCAGGTTCTGCAAAAATTCTTGCTCGTTCTTGCTTTAATTGGGGCTTGCATGGTGATAGGAGATGGCATCTTAACACCAGCTATTTCTGTTCTTTCTGCGGTTTCTGGCCTCGAGCATACCATGAAGATAGAGCATCACCAATATATAATAATCCCGATTTCATGCGCCGTACTGATATGCTTGTTTGCTCTTCAACACTACGGCACGCACAGGATTGGCTTCTTGTTTGCGCCAATAGTGACAGTGTGGCTATTCTGTATCAGTGCCATTGGCTTGTACAATATTATTCACTGGAATCCCAGTGTTTATAGAGCAATTTCTCCTACTTACATGTTTCGATTTCTTAAGAAAACACAAAAGGGAGGCTGGATGTCACTTGGTGGAATTATGCTGTGCATTACTGGTTCAGAGGCAATGTTCGCTGACCTTGGCCATTTTTCACAGTTGTCAATTAAGATTGCTTTCTCTTTTATGGTTTATCCGTCTCTCCTGCTAGCATACATGGGGCAAGCTGCCTATCTTTCTCAAAATTATACCTCTCCATCCGACCATCGAATCGGGTTTTATGTATCTGTACCTGAGAAATTGAGGTGGCCTGTCCTTATAATTGCTGTGCTTGCTGCTGTAGTAGGAAGCCAAGCTATAATCACCGGAACTTTCTCGATTATAAAGCAGTGCTCTGCTTTGGGTTGCTTTCCTCGAGTCAAAATCGTCCATACGTCCTCTAAAGTTCACGGTCAAATCTATATCCCGGAGATTAATTGGATTTTGATGCTGTTGTGCTTGGCTGTTACCATAAGTTTCAGAGACACAAAGCGCTTGGGTCATGCCTCAGGTTTGGCAGTGATCACTGTCATGCTCGTTACTACGTGCTTAATGTCTCTTGTTATCGTCCTGTGTTGGCATCGAAGTGTATTTCTTGCCATAGGCTTCATCTTCTTCTTTGGGACCATTGAATCTCTCTACTTCTCAGCTTCTCTGATCAAATTTCTTGAAGGAGCGTGGGTTCCCATTGCAATTTCTCTTGTATTAATGATTGTTATGTATGTCTGGCACTATGGTACTCTAAAGAAGTTTGAATCTGACATTCAAAACAAGGTTTCTATTAACTGGCTACTTGGTTTGGGCCCGAGCCTCGGCATTGTAAGAGTCCGTGGGATTGGTGTCATTCAGACAGAGCTTGTGTCGGGAATCCCGGGTATCTTCACCCACTTCGTCACCAACATTCCTGCCTTCCATCAAGTTCTTGTTTTCCTTTGCATCAAATATGTCCCAGTGCCACATGTTAGAGCAGAGGAACGGTTCCTAATTGGTCGTATTGGTACGAGTGAATATAGACTGTATAGGTGCATTGTGCGATATGGGTATCGAGACGTTCATAAAGACGACGTAGAGTTTGAGAATGATCTTATATGCAGCATAGCAGAGTTCATAAGATCAGGGAGTGCAGAGTGTAGTGATTCAAGACAGTGCTTTGATAACCATAGTGAAAAGATGACAGTCGTCGGGACATCGTCTACCTCCGAAGATAGAGTTCAGATGGCCGAGACAATCATGGATGAAAGCTCTGAAGATCTGTACAGAGCTTCAGACACAAGGGAAATAAGATCACCAGCTCCAGTTCAGTTGAGAAAACGAGTGCGCTTCATTGTACCAGAGAGCCCGAAAATCGACACGGATACAAGGGAAGAACTACAAGAACTAATGGAAGCAAGAGAAGTAGGAGTGGCTTACATATTAGGACGGTCACACATGAAAGCGAAGCAAGGATCGAGCACGGTGAAAAGAGTAATGATCGATTTCATTTACGAGTTCTTGAGGAAGAACAGCAGAGAAGCTGACTACCCTGTAGGTTTATCACACTCTTCATCAGCCCTTGAAGTGGGTATGATGTATTTGGTTTAG 2352 43.24 MDLESGVRSEKNAKKESWKAVLMMAYQSLGVVYGELGTSPLYVYKNTFAEEDIGHSKSNDEIYGVLSFVFWTLTIVPLLKYIFIVLKADDNGEGGTFALYSLLCRHARVNALPNTQLADSELTDFKMDVLGPQSQESFGFKLKSALEKRQVLQKFLLVLALIGACMVIGDGILTPAISVLSAVSGLEHTMKIEHHQYIIIPISCAVLICLFALQHYGTHRIGFLFAPIVTVWLFCISAIGLYNIIHWNPSVYRAISPTYMFRFLKKTQKGGWMSLGGIMLCITGSEAMFADLGHFSQLSIKIAFSFMVYPSLLLAYMGQAAYLSQNYTSPSDHRIGFYVSVPEKLRWPVLIIAVLAAVVGSQAIITGTFSIIKQCSALGCFPRVKIVHTSSKVHGQIYIPEINWILMLLCLAVTISFRDTKRLGHASGLAVITVMLVTTCLMSLVIVLCWHRSVFLAIGFIFFFGTIESLYFSASLIKFLEGAWVPIAISLVLMIVMYVWHYGTLKKFESDIQNKVSINWLLGLGPSLGIVRVRGIGVIQTELVSGIPGIFTHFVTNIPAFHQVLVFLCIKYVPVPHVRAEERFLIGRIGTSEYRLYRCIVRYGYRDVHKDDVEFENDLICSIAEFIRSGSAECSDSRQCFDNHSEKMTVVGTSSTSEDRVQMAETIMDESSEDLYRASDTREIRSPAPVQLRKRVRFIVPESPKIDTDTREELQELMEAREVGVAYILGRSHMKAKQGSSTVKRVMIDFIYEFLRKNSREADYPVGLSHSSSALEVGMMYLV 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1471607 1476572 + CmoCh04G002960.1 Cmo04g00296 379271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00296 783 TIGRFAM kup: potassium uptake protein 24 781 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cmo04g00296 783 Pfam K+ potassium transporter 26 607 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cmo04g00296 783 PANTHER POTASSIUM TRANSPORTER 6 1 782 - -
Cmo04g00296 783 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 1 782 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00296 Cmo-Chr4:1471607 Cmo05g00002 Cmo-Chr5:4477 0 dispersed
Cmo04g00296 Cmo-Chr4:1471607 Cmo04g01802 Cmo-Chr4:9073552 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00296 K03549 - csv:101212925 1387.86