Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00298 ATGGCATCAAGATCCCCCACAAATTTTTTGGACCTGGCTTCTGGAGATTTACTTGATCTTCCTCGTACACCTAGACCCCTACCACGGGTAATGACTGTTCCTGGAATTATTTCAGAAATGGATGACTATGGGAGCAATGACGGAGATTCGGAGTCTTCATCTGTATGCCGTGAGCGCAAAATCATAGTTGCAAATATGTTGCCCTTGCAAGCTAAAAAAGACGGGCAATCTGGCAAATGGTGCTTCAGTTTTGATGAGGATTCAATTTTATTGCAATTAAAGAATGGGTTTTCACCTGAGATGGAGGTTATATACGTGGGTTCCCTCAAGGTTGAAATCGACGCCAACGACCAGGAAGAGGTTGCTCAGAAGCTTTTTGACAATTTTAATTGTGTACCTACATTTCTACCACATGATCTACAGAAGAAATTTTATCTTGGGTTCTGCAAACAACAGATATGGCCCTTATTCCATTACATGCTACCAATGTGCCCAGAGCACGGTGATCGCTTCGATCGGCTGCTTTGGCAAGCCTATGTTTCTGCAAATAAAATATTTGCTGACAAGGTGATGGAAATCATCAATCCTGAAGAAGATTCTGTTTGGGTTCATGATTACCATTTAATGGTTCTTCCAACATTTTTAAGGAAGCGCTACAATCGAGTTAAACTTGGATTTTTTCTGCATAGCCCGTTTCCGTCATCAGAAATCTATCGAACTTTACCAGTTCGGGATGAGATTCTCCGTGGCCTGCTAAACTGTGATTTAGTTGGTTTTCATACGTTTGATTATGCTCGTCACTTCCTCTCATGCTGTAGCAGAATGTTGGGCCTGGACTATGAATCTAAGCGGGGACATATTGGACTAGATTATTATGGCCGCACGGTATATATCAAAATTCTTCCTGTAGGCATTCACATGGGTCGGCTGGAATCGGTGATGAATCTTCCATCTACATCTGCTAAAGTCAGAGAAGTTCGAGATCAATTCATGGGGAAGAAATTAATTCTTGGTATTGATGACATGGACATTTTTAAGGGCATAAGCCTGAAGCTTCTCGCTGTTGAACAGCTTTTACGGCAACGTCCTGAGTTGCGAGGCAAATTAGTCCTGGTTCAAATAGTGAACCCTGCAAGGGGATCAGGTAAAGATGTACATGAAGCTCAGAAGGAAACCTACTTGGCTGCTGAAAGGATCAATGAAGCTTATGGTTCAAATAACTACAAACCTGTAATTCTGATTGATCGCCCTGTTCCACGTTTTGAGAAGACTGCTTATTATGCATTAGCAGAATGCTGCATAGTGAGTGCTGTAAGGGATGGTATGAATTTGGTTCCATACAAGTATATTGTTTGTAGGCAAGGAACTCCTTTTATGGATAAGGCTATGGGCTTACAAGTTGGTTCTCCTCGGACGAGTATGCTTGTAGTGTCCGAGTTTATTGGTTGCTCGCCTTCTTTAAGTGGAGCTATCAGGGTTAACCCTTGGGACATTGATGCTGTCGCGGATGCCTTGGAATTGGCCATTACCATGCCGGAGTCAGAGAAGCAGTTGCGGCATGAGAAACATTATCGATATGTCAGTTCCCATGATATAGGATATTGGTCTCGAAGTTTTATGCTGGATTTAGAGAGAGCATGCCAAGATCACTATAGTAAACGGTGCTGGGGAATTGGCTTGGGTCTGCGTTTTAGAGTTGTTTCTCTTTCTCCTGGGTTTAGGAAGTTAACAATTGATCACATTGTCTCAGCTTATAAGAGAACACATAGAAGGGCGATATTTTTGGATTACGATGGCACTATTATTCCGCAAAGCTCCATAATTAAGACACCGAGCCCAGAAGTTATCTCCGTCTTGACTACGCTTTGCAATGACCCCTGTAACACTGTGTTCATTGTTAGTGGGAGGGGGAGAAGTTCTTTAGGTGAATGGTTTGCCTCTTGTGAGATGTTGGGGATTGCAGCAGAACATGGGTACTTTATAAGGTGGGGTGGAACTTCAGAATGGGAAACCAGTCCAGTGTCTTCTGATCTGGATTGGATTAAAATTGTAGAGCCAGTGATGAGATCATATACAGAAGCAACTGATGGGTCGTGCATAGAACCAAAAGAGAGTGCTTTAGTCTGGCATCATCAAGATGCCGATTCTGACTTCGGATCCTGTCAAGCTAAGGAATTGCTGGACCATCTAGAAAACGTACTTGCCAACGAACCAGCCGTTGTTAAAAGGGGTCAACATATTGTTGAAGTGAAGCCACAGGGAGTAAGCAAAGGGTTGGTCGCAGAAAAGGTTCTCTCGAGAATGGTAGATAGTGGAAGACCACCTGATTTTGTGATGTGCATCGGAGATGATAGATCAGATGAAGATATGTTCGAGAGCATATCAAGCATTGTCTCTAGTCCTTCACTGCCTTCCGCACCAGAAATTTTTGCCTGCACTGTTGGGCGAAAGCCAAGCAAGGCGAAGTTCTACCTTGATGACACTTCCGACGTCGTGAAATTGCTGCAAGGCCTTGCCTCTACTTCACGTCCAAGACCTCGGCAACTACCCCAAATGCGTGTTTCCTTTGAAAGTGTGTTTTGA 2583 43.44 MASRSPTNFLDLASGDLLDLPRTPRPLPRVMTVPGIISEMDDYGSNDGDSESSSVCRERKIIVANMLPLQAKKDGQSGKWCFSFDEDSILLQLKNGFSPEMEVIYVGSLKVEIDANDQEEVAQKLFDNFNCVPTFLPHDLQKKFYLGFCKQQIWPLFHYMLPMCPEHGDRFDRLLWQAYVSANKIFADKVMEIINPEEDSVWVHDYHLMVLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNCDLVGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYYGRTVYIKILPVGIHMGRLESVMNLPSTSAKVREVRDQFMGKKLILGIDDMDIFKGISLKLLAVEQLLRQRPELRGKLVLVQIVNPARGSGKDVHEAQKETYLAAERINEAYGSNNYKPVILIDRPVPRFEKTAYYALAECCIVSAVRDGMNLVPYKYIVCRQGTPFMDKAMGLQVGSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADALELAITMPESEKQLRHEKHYRYVSSHDIGYWSRSFMLDLERACQDHYSKRCWGIGLGLRFRVVSLSPGFRKLTIDHIVSAYKRTHRRAIFLDYDGTIIPQSSIIKTPSPEVISVLTTLCNDPCNTVFIVSGRGRSSLGEWFASCEMLGIAAEHGYFIRWGGTSEWETSPVSSDLDWIKIVEPVMRSYTEATDGSCIEPKESALVWHHQDADSDFGSCQAKELLDHLENVLANEPAVVKRGQHIVEVKPQGVSKGLVAEKVLSRMVDSGRPPDFVMCIGDDRSDEDMFESISSIVSSPSLPSAPEIFACTVGRKPSKAKFYLDDTSDVVKLLQGLASTSRPRPRQLPQMRVSFESVF 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1483665 1486431 + CmoCh04G002980.1 Cmo04g00298 379273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00298 860 Pfam Trehalose-phosphatase 594 829 IPR003337 GO:0003824|GO:0005992
Cmo04g00298 860 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 847 IPR001830 GO:0003824|GO:0005992
Cmo04g00298 860 Gene3D Glycogen Phosphorylase B; 52 311 - -
Cmo04g00298 860 Gene3D - 590 714 IPR023214 -
Cmo04g00298 860 Gene3D - 720 849 IPR023214 -
Cmo04g00298 860 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 547 - -
Cmo04g00298 860 CDD HAD_TPP 592 833 - -
Cmo04g00298 860 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 9-RELATED 1 847 - -
Cmo04g00298 860 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 592 797 IPR006379 -
Cmo04g00298 860 Pfam Glycosyltransferase family 20 59 544 IPR001830 GO:0003824|GO:0005992
Cmo04g00298 860 SUPERFAMILY HAD-like 591 839 IPR036412 -
Cmo04g00298 860 Gene3D Glycogen Phosphorylase B; 312 528 - -
Cmo04g00298 860 CDD GT20_TPS 59 544 IPR001830 GO:0003824|GO:0005992
Cmo04g00298 860 TIGRFAM T6PP: trehalose-phosphatase 589 838 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01325 Cmo-Chr1:10538104 Cmo04g00298 Cmo-Chr4:1483665 1.30E-38 dispersed
Cmo04g00298 Cmo-Chr4:1483665 Cmo04g01800 Cmo-Chr4:9063736 0 dispersed
Cmo04g00298 Cmo-Chr4:1483665 Cmo10g00141 Cmo-Chr10:656364 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00298 K16055 - csv:101212688 1651.34