Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00312 ATGTCCGTATCGATTTCCAACTGCTTCTCTGATTTGCTCTGCCAGGAGGATTCCTCCGGCGTCTTGTCTGGCGAATCGCCGGGATGTTCTTCCGACCTCGACTCACCGGCCTGCGTCGAGGAATCTATCGCCGTCTTCATCAAGGACGAGCGTCACTTCGTCCCCGATTACGACTGTTTGTCGCGCTTCCAATCTCCGTCGCTGGATGCGGCCGCTAGATTAGACTCTGTTGCATGGATTCTTAAGGTTCAAGTATATTACGGTTTTCAGCCGTTGACGGCGTATCTCTCCGTCAACTACTTGGATCGATTCCTTTGTTCACGGCGTTTGCCGCAAACTAATGGGTGGCCTTTGCAACTACTCTCTGTTGCTTGCCTCTCACTGGCTGCTAAAATGGAGGAACCTCTTGTTCCTGCTTTACTGGATCTTCAGGTTGAGGGGGCCAAATATATATTTGAACCCAGAACAATATGCAGGATGGAATTACTGGTGCTGAGGGTATTGGATTGGCGGCTGCGCTCTGTTACGCCGTTCAATTTCATCGCATTCTTTGCTTGCAAGCTCGATCCATCTGGGGATTTCATGGGGTTTCTTATTTCAAGAGCCACAGAAATTATAATATCAAATATCCGAGAGGTAATCTTTCTGGAGTACTGGCCATCGTGTATAGCGGCGGCCGCCTTGCTTTGTGCAGCAAATGAAGTCCCGAATTTGTCTGTTGTGAATCCAGAGCATGCTGAATCATGGTGCAGTGGTCTAAGGAAAGAAAATATCATCGGCTGCTACCGGTTAATGCAAGAGATTGTGCTTGATAGTTGCCGGATCAAGTCCCCCCAAATCCTACCTCAGTTTAGAGTGACAGTCCGCACTAGAATGAGATCCAGCGACTTATCGCCCTACTCCTCCTCTTCTTCCTCATCTTCGTCATCACCAAACAAAAGGAGAAAATTAAATCAGAGCCTCTGGGTAGGTGATGACAAAGACAACCCCGAAGAATGA 999 48.45 MSVSISNCFSDLLCQEDSSGVLSGESPGCSSDLDSPACVEESIAVFIKDERHFVPDYDCLSRFQSPSLDAAARLDSVAWILKVQVYYGFQPLTAYLSVNYLDRFLCSRRLPQTNGWPLQLLSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSVTPFNFIAFFACKLDPSGDFMGFLISRATEIIISNIREVIFLEYWPSCIAAAALLCAANEVPNLSVVNPEHAESWCSGLRKENIIGCYRLMQEIVLDSCRIKSPQILPQFRVTVRTRMRSSDLSPYSSSSSSSSSSPNKRRKLNQSLWVGDDKDNPEE 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1547610 1550906 - CmoCh04G003120.1 Cmo04g00312 379287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00312 332 SUPERFAMILY Cyclin-like 34 172 IPR036915 -
Cmo04g00312 332 MobiDBLite consensus disorder prediction 294 332 - -
Cmo04g00312 332 Pfam Cyclin, C-terminal domain 175 272 IPR004367 -
Cmo04g00312 332 CDD CYCLIN 73 165 IPR013763 -
Cmo04g00312 332 Pfam Cyclin, N-terminal domain 43 172 IPR006671 -
Cmo04g00312 332 SMART Cyclin_C_2 175 311 IPR004367 -
Cmo04g00312 332 PANTHER CYCLINS 8 319 IPR039361 -
Cmo04g00312 332 MobiDBLite consensus disorder prediction 294 317 - -
Cmo04g00312 332 PANTHER CYCLIN-D1-1 8 319 - -
Cmo04g00312 332 ProSitePatterns Cyclins signature. 73 104 IPR006671 -
Cmo04g00312 332 Gene3D - 56 173 - -
Cmo04g00312 332 Gene3D - 47 236 - -
Cmo04g00312 332 SMART cyclin_7 78 166 IPR013763 -
Cmo04g00312 332 SUPERFAMILY Cyclin-like 157 270 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01845 Cmo-Chr1:13450928 Cmo04g00312 Cmo-Chr4:1547610 9.01E-42 dispersed
Cmo04g00312 Cmo-Chr4:1547610 Cmo05g00921 Cmo-Chr5:7189219 1.84E-156 dispersed
Cmo07g00663 Cmo-Chr7:2986210 Cmo04g00312 Cmo-Chr4:1547610 1.21E-35 dispersed
Cmo09g00280 Cmo-Chr9:1247704 Cmo04g00312 Cmo-Chr4:1547610 1.13E-36 dispersed
Cmo04g00312 Cmo-Chr4:1547610 Cmo04g01665 Cmo-Chr4:8468889 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00312 K18810 - csv:101209417 572.392