Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00318 ATGGCTAGAACCCCTGTTTTCTCCCGCCGCCGGAGGTCCGATCAAATTGACGCTCGAGATCGCTTCCCCACCTCTGATTCCGAAGTCCATGTTCTCGCCGTCGATGATAGCCTCGTCGACCGTAAAGTAATCGAGCGGCTCCTACGCCTCACCGCCTGCCGAGTTACTGCTGTGGATAGTGGAATCAGAGCTCTACAATATCTTGGGTTGCAAGATGAGACGAATTCCCAAGTGGGTTTTGATAGCTTGAAGGTGGATATGATCATTACCGACTACTGTATGCCCGGAATGACAGGCTACGAATTGCTCAAGAAAATAAAGGAATCTTCAACTCTGCGAGAGATTCCGGTGGTGATTATGTCGTCGGAAAACGTGGTGGCGAGGATAGACAGGTGTTTGGAGGAAGGAGCAGAGGATTTCATAGTGAAGCCGGTGAAATTATCAGATGTGAAACGGCTCAGGGAATATATGGTGGGGGACGAAAAGACCGGAAGTGAAATAAATTGGATGAACAAAAGGACGGTACGAGAATCGTCGTGTGATGAAGCCTCATCATCACCGTCCATTTCATCCGATTCTTCTCCACCATCATCATCACCGTCCATTTCATCGGATTCTTCTCCATCGTCTTCATCACCGTCAGATTCGGTTCAATCCACGCCGTCCCCATCGGAGCCGTCTTCACCGACGTCCACCCAATCCGACGACGGCTCTAAATGA 720 50.0 MARTPVFSRRRRSDQIDARDRFPTSDSEVHVLAVDDSLVDRKVIERLLRLTACRVTAVDSGIRALQYLGLQDETNSQVGFDSLKVDMIITDYCMPGMTGYELLKKIKESSTLREIPVVIMSSENVVARIDRCLEEGAEDFIVKPVKLSDVKRLREYMVGDEKTGSEINWMNKRTVRESSCDEASSSPSISSDSSPPSSSPSISSDSSPSSSSPSDSVQSTPSPSEPSSPTSTQSDDGSK 239
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 1580019 1581375 + CmoCh04G003180.1 Cmo04g00318 379293
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00318 239 ProSiteProfiles Response regulatory domain profile. 30 158 IPR001789 GO:0000160
Cmo04g00318 239 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-RELATED 11 232 - -
Cmo04g00318 239 CDD REC_typeA_ARR 31 153 - -
Cmo04g00318 239 MobiDBLite consensus disorder prediction 170 239 - -
Cmo04g00318 239 SUPERFAMILY CheY-like 29 157 IPR011006 -
Cmo04g00318 239 Pfam Response regulator receiver domain 31 150 IPR001789 GO:0000160
Cmo04g00318 239 Gene3D - 29 187 - -
Cmo04g00318 239 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 232 IPR045279 GO:0009736
Cmo04g00318 239 SMART REC_2 29 154 IPR001789 GO:0000160
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00318 Cmo-Chr4:1580019 Cmo07g01403 Cmo-Chr7:8052325 1.76E-53 dispersed
Cmo04g00099 Cmo-Chr4:525284 Cmo04g00318 Cmo-Chr4:1580019 6.33E-44 transposed
Cmo10g00165 Cmo-Chr10:747025 Cmo04g00318 Cmo-Chr4:1580019 8.18E-66 transposed
Cmo04g00318 Cmo-Chr4:1580019 Cmo04g01675 Cmo-Chr4:8497777 1.85E-122 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9520 PF00072 Response_reg 1.10E-21 CL0304 Cmo TR
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00318 K14492 - csv:101209506 318.161