Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo04g00318 | ATGGCTAGAACCCCTGTTTTCTCCCGCCGCCGGAGGTCCGATCAAATTGACGCTCGAGATCGCTTCCCCACCTCTGATTCCGAAGTCCATGTTCTCGCCGTCGATGATAGCCTCGTCGACCGTAAAGTAATCGAGCGGCTCCTACGCCTCACCGCCTGCCGAGTTACTGCTGTGGATAGTGGAATCAGAGCTCTACAATATCTTGGGTTGCAAGATGAGACGAATTCCCAAGTGGGTTTTGATAGCTTGAAGGTGGATATGATCATTACCGACTACTGTATGCCCGGAATGACAGGCTACGAATTGCTCAAGAAAATAAAGGAATCTTCAACTCTGCGAGAGATTCCGGTGGTGATTATGTCGTCGGAAAACGTGGTGGCGAGGATAGACAGGTGTTTGGAGGAAGGAGCAGAGGATTTCATAGTGAAGCCGGTGAAATTATCAGATGTGAAACGGCTCAGGGAATATATGGTGGGGGACGAAAAGACCGGAAGTGAAATAAATTGGATGAACAAAAGGACGGTACGAGAATCGTCGTGTGATGAAGCCTCATCATCACCGTCCATTTCATCCGATTCTTCTCCACCATCATCATCACCGTCCATTTCATCGGATTCTTCTCCATCGTCTTCATCACCGTCAGATTCGGTTCAATCCACGCCGTCCCCATCGGAGCCGTCTTCACCGACGTCCACCCAATCCGACGACGGCTCTAAATGA | 720 | 50.0 | MARTPVFSRRRRSDQIDARDRFPTSDSEVHVLAVDDSLVDRKVIERLLRLTACRVTAVDSGIRALQYLGLQDETNSQVGFDSLKVDMIITDYCMPGMTGYELLKKIKESSTLREIPVVIMSSENVVARIDRCLEEGAEDFIVKPVKLSDVKRLREYMVGDEKTGSEINWMNKRTVRESSCDEASSSPSISSDSSPPSSSPSISSDSSPSSSSPSDSVQSTPSPSEPSSPTSTQSDDGSK | 239 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 1580019 | 1581375 | + | CmoCh04G003180.1 | Cmo04g00318 | 379293 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo04g00318 | 239 | ProSiteProfiles | Response regulatory domain profile. | 30 | 158 | IPR001789 | GO:0000160 | |
| Cmo04g00318 | 239 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR ARR3-RELATED | 11 | 232 | - | - | |
| Cmo04g00318 | 239 | CDD | REC_typeA_ARR | 31 | 153 | - | - | |
| Cmo04g00318 | 239 | MobiDBLite | consensus disorder prediction | 170 | 239 | - | - | |
| Cmo04g00318 | 239 | SUPERFAMILY | CheY-like | 29 | 157 | IPR011006 | - | |
| Cmo04g00318 | 239 | Pfam | Response regulator receiver domain | 31 | 150 | IPR001789 | GO:0000160 | |
| Cmo04g00318 | 239 | Gene3D | - | 29 | 187 | - | - | |
| Cmo04g00318 | 239 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 11 | 232 | IPR045279 | GO:0009736 | |
| Cmo04g00318 | 239 | SMART | REC_2 | 29 | 154 | IPR001789 | GO:0000160 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo04g00318 | Cmo-Chr4:1580019 | Cmo07g01403 | Cmo-Chr7:8052325 | 1.76E-53 | dispersed | |
| Cmo04g00099 | Cmo-Chr4:525284 | Cmo04g00318 | Cmo-Chr4:1580019 | 6.33E-44 | transposed | |
| Cmo10g00165 | Cmo-Chr10:747025 | Cmo04g00318 | Cmo-Chr4:1580019 | 8.18E-66 | transposed | |
| Cmo04g00318 | Cmo-Chr4:1580019 | Cmo04g01675 | Cmo-Chr4:8497777 | 1.85E-122 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 9520 | PF00072 | Response_reg | 1.10E-21 | CL0304 | Cmo | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo04g00318 | K14492 | - | csv:101209506 | 318.161 |