Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00319 ATGGCTATGCTGCTTCACCTTCGCCGTCAGCCATGGCCTCTTCATCTCCTACTTCTCTTCCTCTCTGTTTCCCCTGTTTCTTATTGCCAAGACACTCCACCTCAAAATATCGAAACTTTCTACCCAATTCTTCCTCCACCACCGTTCTTACCTGTCCATCCGCCGTCGCCATCGCCGTCATCATCGCCGTCGTCGTCGACGAGGACCATCGTGACGGCGGTGGCTATCACTGCAGTGGGCATGGCTCTGATTTCCACGGTGTTCTTCTTTTTAATCCAGAGATATCTGATCAGAAGAAAACGGAAAACAGAGGAGGTGAATTCGGGACCGGGTCAGGGGCCGGTGTCGCAGCCGGCGGTTGCTCGGAGTGAATTTGCGCGTGTTGATGGGAATCTTAAGGGGTTTATTGTGGATGAGGATGGGTTGGATGTGATTTATTGGAAGAGACTTGAAAGGAGGAAATCTAAGAATAGCTTTGATCGGGGTGATGGAGAAGGAAATGTTCAAGCAAATCGAAGCAAAAAGTCGGAGCCTGTTCAAGAGATTCCTTTACTTCGAGGGAAATCTTCGAGTTCTCATGTTAAAATTTCACCGGAAGATGAAGAACCCCGTCGGGTTACTCCTCCGCCACCTCCGCCACCGTCCCACATTAACAACCCTCCGCCATTTACTGGGAAGTCTGTTCAGGAAGTTGGAAAACCATCGAGCAGTTCAATTCTTTCATCACCTGCACCACCGCAACCAGCGGCAATTCCGGTACCTCCGTCACAATCTCTCATGGCTGTTCCTAACAATAAGAGCTCTGTTCCACCACCACCGCCGCCGATTCCAGCCAAGACCGTTTCAAGACCGCCACCGCCGCCTCCTCCCATTGCTACCAAGACCAATTCAAGACCGCCGCCACCGCCTCCCATTCCAGCCAAGACCAATTCAGCAGCCCCACCTCCCCCTCCAATAGTGGCCAAGGCAAATCCGGCAGCACCGCCGCCGCCCAAGGCCGGCAGTTCCAAATTGCCGTTACGGCCTGCACCTCAAAAAGAGGGTAAATCCTCTGGAGAATCTTCTACATCGGCCGACAATGGTCAGGTTAAAATGAAGCCTCTGCATTGGGATAAAGTGAACACCGCAAATGCCGATCATTCCATGGTTTGGGACAAAATGCAAGCCGGTTCTTTCAAATTTGATGGGGATCTTATGGAAGCTCTGTTTGGATACGTCGCAACCAACCGGAAGTCCCCCCGGAGTGAGGCTAATTCTTCAGCAATCCCCACTGGCCGGAACTCAGGGCCATCGCAGACTTTCATTCTTGAACCCAAGAAGTCACAGAACATAGCCATTGTAGTCAAGTCCTTAACCATTCCTCGCAACGAAATCCTCGATGCGCTCAACGAAGGCCAAGGCCTCGAAACAGATGTACTTGAAAAACTCACGAGAATTACTCTGACACAAGAAGAAATTTCTCAGATTCTTGCTTACAAAGGAGACCCCCAAAAGCTTGCTGATGCCGAAACTTTCCTTTACCCTCTCCTCAAAGCGGTTCCATCTGCCTTTGCGCGGTTCAACGCCATGCTTTTCCGATTGACTTTCGGCTCTGATATTCATCATCTAAAGGAATCTCTAGAAATTCTGGAATCGGCCTGCAAGGAGCTTAGAACTCGAGGGCTGTTTCTGAAGCTGCTTGAAGCAGTTCTCAAAGCTGGGAATCGGCTGAATGCGGGAACTGCAAGAGGAAATGCCAGAGCTTTCAACCTTTCAGCTCTCCGGAAGCTCTCGGATGTTAGGAGCACTGATGGGAAAACCACTTTGCTTCACTTTGTGGTGCAAGAAGTCATCAGAGCAGAAGGGAAAAGGTGTGTTTTAAACAGGAACAAGAGCTTGAGCCGTAACACCAGCCATGCCAGCGACAGCAGCGTTAGTACTTCCGATAATTCATCTTCGAAAGAGGACAGAGTAAATGAATACATGATGTTGGGGTTGCCAGTGGTGGGAGGTCTGAGCGCTGAGTTCTCTAATGTAAAGAAGGCAGCAACGATCGACTATGAGAGCTTCGCCAACACCGGAACGTCTCTGACCAACCGAACTGCAGAAATCCGGCAGCTCATGGCTCAAATTGGGAACAATGGAGGTGGGTTTGGGAAAGAAATGAGAGGGTTTCTTGAGGCAGCAGAGAGTGAGCTGAAGGTGGTGAGAGAAGAACAGACGAAGGTGATGGAGCTAGTGATGAAGACAACAGAGTATTATCAAGCTGGAAGTTCAAGAGATAAGGAATCAAATCGGCTTCAATTCTTCATCATAGTTAAGGATTTTCTAGAAATGGTAGATCGGGTGTGTGTGGAAATTTCTAGAAATCTCCAGAAAAGAAGATCGTCGACAGTAAATGTGGGTTCATCGCCGGTGAGATCGAAGGCCATCTTCCCTAACCTGCCGCCAAATTTTATGTCAGACAAGTCAAGAGGGAGTTCTAGTGATTCAGATAATGAATTCTGA 2487 49.26 MAMLLHLRRQPWPLHLLLLFLSVSPVSYCQDTPPQNIETFYPILPPPPFLPVHPPSPSPSSSPSSSTRTIVTAVAITAVGMALISTVFFFLIQRYLIRRKRKTEEVNSGPGQGPVSQPAVARSEFARVDGNLKGFIVDEDGLDVIYWKRLERRKSKNSFDRGDGEGNVQANRSKKSEPVQEIPLLRGKSSSSHVKISPEDEEPRRVTPPPPPPPSHINNPPPFTGKSVQEVGKPSSSSILSSPAPPQPAAIPVPPSQSLMAVPNNKSSVPPPPPPIPAKTVSRPPPPPPPIATKTNSRPPPPPPIPAKTNSAAPPPPPIVAKANPAAPPPPKAGSSKLPLRPAPQKEGKSSGESSTSADNGQVKMKPLHWDKVNTANADHSMVWDKMQAGSFKFDGDLMEALFGYVATNRKSPRSEANSSAIPTGRNSGPSQTFILEPKKSQNIAIVVKSLTIPRNEILDALNEGQGLETDVLEKLTRITLTQEEISQILAYKGDPQKLADAETFLYPLLKAVPSAFARFNAMLFRLTFGSDIHHLKESLEILESACKELRTRGLFLKLLEAVLKAGNRLNAGTARGNARAFNLSALRKLSDVRSTDGKTTLLHFVVQEVIRAEGKRCVLNRNKSLSRNTSHASDSSVSTSDNSSSKEDRVNEYMMLGLPVVGGLSAEFSNVKKAATIDYESFANTGTSLTNRTAEIRQLMAQIGNNGGGFGKEMRGFLEAAESELKVVREEQTKVMELVMKTTEYYQAGSSRDKESNRLQFFIIVKDFLEMVDRVCVEISRNLQKRRSSTVNVGSSPVRSKAIFPNLPPNFMSDKSRGSSSDSDNEF 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1583995 1586905 + CmoCh04G003190.1 Cmo04g00319 379294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00319 828 MobiDBLite consensus disorder prediction 410 431 - -
Cmo04g00319 828 ProSiteProfiles Formin homology-2 (FH2) domain profile. 355 799 IPR015425 -
Cmo04g00319 828 MobiDBLite consensus disorder prediction 266 337 - -
Cmo04g00319 828 SUPERFAMILY Formin homology 2 domain (FH2 domain) 431 788 - -
Cmo04g00319 828 MobiDBLite consensus disorder prediction 221 244 - -
Cmo04g00319 828 PANTHER FORMIN-RELATED 299 824 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cmo04g00319 828 PANTHER FORMIN-RELATED 12 306 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cmo04g00319 828 SMART it6_source 355 788 IPR015425 -
Cmo04g00319 828 Coils Coil 533 553 - -
Cmo04g00319 828 MobiDBLite consensus disorder prediction 626 648 - -
Cmo04g00319 828 Pfam Formin Homology 2 Domain 358 774 IPR015425 -
Cmo04g00319 828 MobiDBLite consensus disorder prediction 348 362 - -
Cmo04g00319 828 MobiDBLite consensus disorder prediction 805 828 - -
Cmo04g00319 828 Coils Coil 719 739 - -
Cmo04g00319 828 MobiDBLite consensus disorder prediction 411 431 - -
Cmo04g00319 828 MobiDBLite consensus disorder prediction 156 363 - -
Cmo04g00319 828 MobiDBLite consensus disorder prediction 626 645 - -
Cmo04g00319 828 Gene3D Formin, FH2 domain 355 784 IPR042201 -
Cmo04g00319 828 PANTHER FORMIN-LIKE PROTEIN 4 299 824 - -
Cmo04g00319 828 PANTHER FORMIN-LIKE PROTEIN 4 12 306 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00319 Cmo-Chr4:1583995 Cmo05g00906 Cmo-Chr5:6956646 1.95E-10 dispersed
Cmo05g00951 Cmo-Chr5:7646062 Cmo04g00319 Cmo-Chr4:1583995 2.50E-08 transposed
Cmo04g00319 Cmo-Chr4:1583995 Cmo04g01676 Cmo-Chr4:8502770 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00319 - - mcha:111019114 1053.12