Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00333 ATGAGTGGATGGGATAGGGTTGGATCGTCGAGTTCGAGATTGGGCCGTGGCAATTCTGCCATGCCTGAGAGGACCTCCTCTTCTAACACGGTTCGACTCGGCCGAGTCCAGCCACAGGCGCCTGGATATCGCACCATCTTCTGTAATGATCGCGACGCCAATCTCCTTATCAAATTCAAGGGGAATTCAGTTTCGACCACAAAGTACAACTTCTTCACGTTCTTTCCGAAAGGGTTGTTTGAACAGTTCAGGCGTGTGGCTAACCTATACTTTCTTACAATCTCAATCTTATCCACCACACCGATCAGTCCTGTGCATCCAATCACAAATGTGGTCCCTTTAAGTCTGGTTCTACTTGTTTCTCTCATTAAAGAAGCATTTGAGGACTGGAAACGATTCCAGAATGATATGGCAATTAATAATAATCTTGTAGATGTGCTGCAAGATCAAAAGTGGGAGAGCGTTCCTTGGAAAAAGTTGCAGGTTGGGGACATTGTTAGGATTCGGCAAGATGGATTCTTTCCTGCAGATCTTCTTTTCCTTGCTAGTACAAATCCAGATGGTGTCTGCTACATTGAGACTGCTAACCTGGATGGGGAGACAAATTTGAAGATTAGAAAGGCCCTGGAAAAGACATGGGATTACTTGACGCCAGAGAAGGCATCTGAATTTAAAGGTGAAGTACAATGCGAGCAACCAAACAATTCACTCTACACTTTCACTGGCAATGTTATTATTCAGAAGCAAACATTACCTCTCAGCCCAAACCAACTTTTGTTGCGAGGATGCAGTCTCAGGAACACGGAATATATTGTTGGGGCAGTTATTTTTACAGGCCATGAAACAAAGGTTATGATGAATGCTATGAATGTTCCCTCCAAAAGAAGTACACTGGAGAAAAAACTTGACAAACTTATTCTTACGCTTTTTGCTACTCTCTTTATCATGTGTTTGATTGGAGCAATTGGCAGTGGCGTGTTTGTAAACAAAAAGTACTACTACTTAGCTCTTGATAAGGGAGGGGAAAACCAATTTAACCCTAGCAACCGATTCCTGGTTGTCATTCTGACCATGTTTACCCTTATTACTCTGTATTCAACCATCATTCCTATTTCTCTTTATGTTTCCATTGAGATGATAAAATTTATTCAATCGACGCAATATATCAATAAGGATCTAAATATGTTCCATGCTGATAGCAATACCCCTGCATTGGCTAGAACTTCCAATCTGAATGAAGAACTGGGGCAGGTAGAGTACATCTTTTCAGATAAAACTGGTACTCTTACCAGGAATCTAATGGAGTTCTTTAAGTGTTCAATCGGTGGAGAGATATATGGCACTGGTGTCACTGAAATAGAGAGGGGAATTGCTGAGCAGAATGGCTTGAAAGTGGAAGAGGAGCACAAATCAGCCAATGCTGTACAGGAAAAGGGATTTAATTTTGATGATGCTAGGCTTATGAGAGGAGCATGGAGAAATGAACCCAACTCTGATCTCTGTAAGGAATTTTTCAGATGCCTTGCTATTTGCCATACTGTACTCCCTGAGGGCGATGAATCCCCTGAAAAGATCACATATCAAGCAGCATCACCTGATGAGGCTGCGTTGGTAACTGCGGCTAAAAACTTTGGCTTCTTCTTTTACAGGCGTACACCTACTACAATATATGTTCGTGAATCTCATGTTGAAAAGATGGGTAAAATTCTAGATGTTTCTTATGAAATTCTCAATGTACTTGAGTTCAATAGTGTAAGGAAGCGTCAGTCTGTGGTGTGTCGTTATTCTGATGGTAGGCTTGTCTTGTACTGCAAGGGTGCTGATACCGTTATATATGAGAGATTGGCTGGTGGAAATGATGATCTGAAGAATATAACGAGGGAACACTTGGAGAAATTTGGATCGTCTGGTTTGAGAACTCTATGTCTTGCTTATAGAGACTTGCATCCCGATATGTATGAAACCTGGAATGAGAAATTCATTCAAGCTAAGTCTTCACTAAGAGATCGTGAAAAGAAATTGGATGAGGTTGCAGAACTTATAGAGAAAGACCTTATTTTGATTGGCTGTACTGCTATCGAAGATAAGCTTCAAGAAGGAGTACCAAACTGTATACAGACACTTTCTAGAGCCGGTATCAAGATTTGGATGCTAACGGGAGACAAGATGGAAACTGCTATAAATATAGCTTATGCTTGCAATTTAATAAACAATGAAATGAAACAATTTATTATCAGTTCAGAAACAGATGCAATCAGAGAAGTTGAAAACAGGGGTGACCAAGTAGAGCTTGCACGTTTTACTAGAGAAGAAGTAAAAAAGGAATTGAAGAAATGTCTTGAGGAAGCGCAGCAGTGTTTACAATCTCTGTCTCCACCAAAATTAGCACTTGTTATAGATGGAAAATGTTTGATGTATGCATTAGATCCAAGTCTGCGAGTTACGTTACTAAATTTGAGCTTGAATTGTAGTTCGGTTGTTTGCTGCCGGGTTTCTCCTTTGCAGAAAGCGCAGGTGACAAGTCTGGTGAAGAAAGGTGCAAAGAAAATAACACTTAGTATTGGTGATGGTGCTAATGATGTTAGTATGATTCAAGCAGCTCATGTGGGCATTGGAATAAGTGGGCAGGAGGGAATGCAAGCTGTGATGGCTAGTGATTTTGCTATTGCCCAGTTTCGCTTTCTCACAGATTTACTTCTTGTACATGGACGATGGTCATATCTTAGAATCTGCAAGGTTGTCACATACTTCTTTTACAAGAATCTTACGTTCACTTTAACTCAGTTTTGGTTCACCTTTCAAACTGGATTTTCTGGTCAAAGATTCTATGATGATTGGTTCCAGTCATTGTATAATGTCATATTTACGGCCCTACCTGTAATAATGGTCGGACTATTTGATAAGGATGTTAGTGCGGCCCTATCTAAAAAGTACCCCGAGCTCTATAGAGAGGGAATAAGAAATGTGTTTTTCAAGTGGAGAGTTGTAACAACTTGGGCCATCTTTTCCGTCTACCAATCTTTAGTCTTTTATTATTTTGTAACCGCTTCCAGTTCCAGCAGTCAATCGGCATCTGGCAAGGTGTTTGGTCTATGGGATATCAGCACGATGACTTTCACATGCATTGTAGTGACTGTGAATTTGCGGCTGCTTATGATCTGCAATTCAATTACTAGGTGGCATTACATAACGGTTGGGGGAAGCATTTTAGCATGGTTCATGTTTATTTTGCTATATTCTGGTCTTATGACACCACATGATAGGCAGGAAAATGTATATTTCGTCATATATGTCTTAATGAGCACACTCTATTTTTACGTAGCTGTCCTCCTTGTCCCTGTCGTTGCGCTTCTTTGTGATTTTGCTTACCAAGGCATTCAGAGATGGTTTTTCCCCTATGATTATCAGATAGTTCAAGAAATTCATAGGCATGAACCTGATGGTAGAAGTGCGGTAGGATTGTTGGAGATTCCGAACCATCTTACACCGGAAGAGGCAAGAAGCTATGCCATGTCTCAACTCCCGCGGGAGTTATCGAAGCACACTGGCTTTGCTTTCGATTCACCTGGCTATGAGTCATTTTTTGCTGCACAGCTTGGTATTTATGCCCCACAGAAGGCATGGGATGTTGCCAGGAGAGCCAGTGTGAAGTCAAGACTAAAGATTAGGGAAAAGAAATGA 3681 40.99 MSGWDRVGSSSSRLGRGNSAMPERTSSSNTVRLGRVQPQAPGYRTIFCNDRDANLLIKFKGNSVSTTKYNFFTFFPKGLFEQFRRVANLYFLTISILSTTPISPVHPITNVVPLSLVLLVSLIKEAFEDWKRFQNDMAINNNLVDVLQDQKWESVPWKKLQVGDIVRIRQDGFFPADLLFLASTNPDGVCYIETANLDGETNLKIRKALEKTWDYLTPEKASEFKGEVQCEQPNNSLYTFTGNVIIQKQTLPLSPNQLLLRGCSLRNTEYIVGAVIFTGHETKVMMNAMNVPSKRSTLEKKLDKLILTLFATLFIMCLIGAIGSGVFVNKKYYYLALDKGGENQFNPSNRFLVVILTMFTLITLYSTIIPISLYVSIEMIKFIQSTQYINKDLNMFHADSNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEIYGTGVTEIERGIAEQNGLKVEEEHKSANAVQEKGFNFDDARLMRGAWRNEPNSDLCKEFFRCLAICHTVLPEGDESPEKITYQAASPDEAALVTAAKNFGFFFYRRTPTTIYVRESHVEKMGKILDVSYEILNVLEFNSVRKRQSVVCRYSDGRLVLYCKGADTVIYERLAGGNDDLKNITREHLEKFGSSGLRTLCLAYRDLHPDMYETWNEKFIQAKSSLRDREKKLDEVAELIEKDLILIGCTAIEDKLQEGVPNCIQTLSRAGIKIWMLTGDKMETAINIAYACNLINNEMKQFIISSETDAIREVENRGDQVELARFTREEVKKELKKCLEEAQQCLQSLSPPKLALVIDGKCLMYALDPSLRVTLLNLSLNCSSVVCCRVSPLQKAQVTSLVKKGAKKITLSIGDGANDVSMIQAAHVGIGISGQEGMQAVMASDFAIAQFRFLTDLLLVHGRWSYLRICKVVTYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIMVGLFDKDVSAALSKKYPELYREGIRNVFFKWRVVTTWAIFSVYQSLVFYYFVTASSSSSQSASGKVFGLWDISTMTFTCIVVTVNLRLLMICNSITRWHYITVGGSILAWFMFILLYSGLMTPHDRQENVYFVIYVLMSTLYFYVAVLLVPVVALLCDFAYQGIQRWFFPYDYQIVQEIHRHEPDGRSAVGLLEIPNHLTPEEARSYAMSQLPRELSKHTGFAFDSPGYESFFAAQLGIYAPQKAWDVARRASVKSRLKIREKK 1226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1625417 1638073 - CmoCh04G003330.1 Cmo04g00333 379308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00333 1226 Pfam Phospholipid-translocating ATPase N-terminal 46 110 IPR032631 -
Cmo04g00333 1226 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
Cmo04g00333 1226 PRINTS P-type cation-transporting ATPase superfamily signature 854 873 - -
Cmo04g00333 1226 Coils Coil 769 789 - -
Cmo04g00333 1226 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 25 1222 - -
Cmo04g00333 1226 Pfam Cation transport ATPase (P-type) 520 614 - -
Cmo04g00333 1226 Gene3D - 534 687 IPR023299 GO:0000166
Cmo04g00333 1226 SFLD C1.7: P-type atpase like 404 905 - -
Cmo04g00333 1226 Pfam E1-E2 ATPase 142 375 - -
Cmo04g00333 1226 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 827 933 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo04g00333 1226 Gene3D - 124 289 - -
Cmo04g00333 1226 SUPERFAMILY Calcium ATPase, transmembrane domain M 54 1132 IPR023298 -
Cmo04g00333 1226 Pfam Phospholipid-translocating P-type ATPase C-terminal 882 1132 IPR032630 -
Cmo04g00333 1226 CDD P-type_ATPase_APLT_Dnf-like 61 1014 - -
Cmo04g00333 1226 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 59 1140 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cmo04g00333 1226 SUPERFAMILY HAD-like 410 897 IPR036412 -
Cmo04g00333 1226 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
Cmo04g00333 1226 Gene3D - 688 894 IPR023214 -
Cmo04g00333 1226 SFLD p-type atpase 404 905 IPR044492 -
Cmo04g00333 1226 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 25 1222 - -
Cmo04g00333 1226 SUPERFAMILY Calcium ATPase, transduction domain A 141 285 IPR008250 -
Cmo04g00333 1226 MobiDBLite consensus disorder prediction 1 34 - -
Cmo04g00333 1226 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 429 693 IPR023299 GO:0000166
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00333 Cmo-Chr4:1625417 Cmo13g01090 Cmo-Chr13:8998731 0 dispersed
Cmo04g01690 Cmo-Chr4:8573938 Cmo04g00333 Cmo-Chr4:1625417 1.09E-111 dispersed
Cmo04g00333 Cmo-Chr4:1625417 Cmo04g01689 Cmo-Chr4:8563848 3.99E-57 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00333 K14802 - csv:101207069 2287.3