Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00338 ATGGCGAAAGATGAAGACGTGAAGCTTGTGGGTTCCTGGACTAGTCCATTCGTGATGAGGCCAAGAATCGCCCTCAACATCAAATCCGTACACTACGACTTCATTCAAGAAACATTCGGATCCAAAAGCCCGCTTCTTCTCCAATCCAACCCTGTTCACAAGAAGATCCCTGTTCTCATTCACGCCGGCAAACCCATCGCCGAATCCTCCATCATCGTTGAGTATATCGATGAATTCTGGTCCTCCGCTCCCTCCATCCTTCCCTCCGACCCTTACGATCGCGCCCTTGCTCGATTCTGGGCTTCCGTCGTTGACCAAAAGTTTTTCACACCAATGAAAGCCAGTATGGGTGCAGAAGGGGAGGCGAAGAAGGGGCTTATGAATCAAGCGGTGGAAGCCATAGGGTTATTGGAGGAAGCTTTCGGGACTCTGAGCAGAGGGAAGGCGTTCTTCGGCGGAGACCATATTGGGTTTGTTGATATCGCTTTCGGGTCGTTTCTGGGGTGGATTAGAGTGGCGGAGATATCAAATGGGATGAAATTGATAGACGCAGCGAAGACGCCAGGGCTGGACGGATGGGCTCAGAGATTCTCTGCCCACGACGCTGTGAAAGATGTGTTGCCCGACACTGCAAAGCTTCTGGAGTTCTCCAAGCTTCTGGCAGCCAAACTTAAAGAAAAGCATTGA 687 51.09 MAKDEDVKLVGSWTSPFVMRPRIALNIKSVHYDFIQETFGSKSPLLLQSNPVHKKIPVLIHAGKPIAESSIIVEYIDEFWSSAPSILPSDPYDRALARFWASVVDQKFFTPMKASMGAEGEAKKGLMNQAVEAIGLLEEAFGTLSRGKAFFGGDHIGFVDIAFGSFLGWIRVAEISNGMKLIDAAKTPGLDGWAQRFSAHDAVKDVLPDTAKLLEFSKLLAAKLKEKH 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1659484 1660373 + CmoCh04G003380.1 Cmo04g00338 379313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00338 228 SUPERFAMILY Thioredoxin-like 6 109 IPR036249 -
Cmo04g00338 228 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 84 IPR004045 -
Cmo04g00338 228 SUPERFAMILY GST C-terminal domain-like 78 222 IPR036282 -
Cmo04g00338 228 Gene3D Glutaredoxin 1 86 - -
Cmo04g00338 228 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 216 IPR010987 -
Cmo04g00338 228 Pfam Glutathione S-transferase, N-terminal domain 6 78 IPR004045 -
Cmo04g00338 228 SFLD Glutathione Transferase (cytosolic) 3 226 IPR040079 -
Cmo04g00338 228 SFLD Main.3: Omega- and Tau-like 3 226 IPR045073 -
Cmo04g00338 228 Gene3D - 87 227 - -
Cmo04g00338 228 Pfam Glutathione S-transferase, C-terminal domain 110 200 IPR004046 -
Cmo04g00338 228 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 5 218 IPR045073 -
Cmo04g00338 228 PANTHER GLUTATHIONE S-TRANSFERASE U17 5 218 - -
Cmo04g00338 228 CDD GST_N_Tau 7 80 - -
Cmo04g00338 228 CDD GST_C_Tau 91 220 IPR045074 GO:0004364|GO:0006749
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00338 Cmo-Chr4:1659484 Cmo04g00688 Cmo-Chr4:3408834 5.71E-46 dispersed
Cmo06g00337 Cmo-Chr6:1631372 Cmo04g00338 Cmo-Chr4:1659484 8.19E-08 dispersed
Cmo04g00338 Cmo-Chr4:1659484 Cmo04g00339 Cmo-Chr4:1664939 2.19E-141 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00338 K00799 - qsu:112040052 312.768