Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00339 ATGGCAAGAGATCAGGACGTGCAGCTTGTGGGTTTCTGGACTAGTCCATTCGTGATGAGGCCCAGAATCGCCCTCAACATCAAATCCGTACACTACGAGTTCATTCAAGAAACATTCGGATCCAAAAGCCCGCTTCTTCTCCAATCCAACCCTGCTCTCAAGAAGATCCCTGTTCTCATTCATGCCGGCAAACCCATCGCCGAATCCTCCATCATCGTTGAGTATATCGATGATTTCTGGCCCTCCGCTCCTTACGATCGCGCCCTCGCTCGATTCTGGGGCTCCGTCGTCGACGAAAAGTTCTACGAGCCAATGAAAGCGAGTATGGGTGCAGAAGGGGAAGTGAAGAAGGGGCTTATAAATCAAGGGGTGGAAGCGATAGGGTTATTGGAGGAAGCTTTCGGGACGCTGAGCAGAGGGAAGGCGTTCTTCGGCGGAGACCATATTGGGTTTGTTGATATCGCTTTTGGGTCGTTTCTGGGGTGGATTAGAGTGGCGGAGATATCAAATGGGATGAAATTGATGGACGCAGGGAAGACGCCAGGGCTCGACGGATGGTCTCAGAGATTCTCTGCACATCACGCTGTGAAAGATCTGTTGCCCGACACTGCAAAGCTTCTGGAGTTCTCCAATGTTGTCTCAGCCAAACTGAAAGAGAATCAATTGTTTGAGGACCACGTTAGTTCAACTTCTTTCCCGCCATCCCAGATTCCTCTTCGGATAACAGGAAGAATGGCGTACGCAGCAATGAAACCAACTAAGCCAGGCTTAGAAGATACGCAAGAGCAAATCCATAAGATCAGGATTACTCTCTCCTCAAAAAATGTCAAGAACCTTGAGAAGGTTTGTGCCGACTTGGTTCGTGGTGCCAAGGACAAGAGGTTGAGGGTCAAAGGGCCAGTAAGAATGCCCACTAAGGTTCTTCACATCACAACCAGAAAATCTCCATGTGGTGAAGGTACCAACACATGGGACAGATTCGAGCTTCGTGTCCACAAGCGAGTTATCGACCTATTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCCATCACCATCGAACCTGGTGTGGAGGTTGAGGTCACCATTGCCGATCAATGA 1101 49.5 MARDQDVQLVGFWTSPFVMRPRIALNIKSVHYEFIQETFGSKSPLLLQSNPALKKIPVLIHAGKPIAESSIIVEYIDDFWPSAPYDRALARFWGSVVDEKFYEPMKASMGAEGEVKKGLINQGVEAIGLLEEAFGTLSRGKAFFGGDHIGFVDIAFGSFLGWIRVAEISNGMKLMDAGKTPGLDGWSQRFSAHHAVKDLLPDTAKLLEFSNVVSAKLKENQLFEDHVSSTSFPPSQIPLRITGRMAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIADQ 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1664939 1667480 + CmoCh04G003390.1 Cmo04g00339 379314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00339 366 Hamap 30S ribosomal protein S10 [rpsJ]. 264 363 IPR001848 GO:0003735|GO:0005840|GO:0006412
Cmo04g00339 366 TIGRFAM uS10_euk_arch: ribosomal protein uS10 265 363 IPR005729 GO:0003735|GO:0006412|GO:0015935
Cmo04g00339 366 SUPERFAMILY Thioredoxin-like 6 84 IPR036249 -
Cmo04g00339 366 Gene3D - 82 221 - -
Cmo04g00339 366 SUPERFAMILY GST C-terminal domain-like 78 211 IPR036282 -
Cmo04g00339 366 Pfam Ribosomal protein S10p/S20e 268 362 IPR027486 -
Cmo04g00339 366 PRINTS Ribosomal protein S10 family signature 301 316 IPR001848 GO:0003735|GO:0005840|GO:0006412
Cmo04g00339 366 PRINTS Ribosomal protein S10 family signature 323 337 IPR001848 GO:0003735|GO:0005840|GO:0006412
Cmo04g00339 366 PRINTS Ribosomal protein S10 family signature 266 279 IPR001848 GO:0003735|GO:0005840|GO:0006412
Cmo04g00339 366 SUPERFAMILY Ribosomal protein S10 266 363 IPR036838 -
Cmo04g00339 366 Gene3D Glutaredoxin 1 81 - -
Cmo04g00339 366 Pfam Glutathione S-transferase, C-terminal domain 132 192 IPR004046 -
Cmo04g00339 366 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 83 209 IPR010987 -
Cmo04g00339 366 Gene3D Ribosomal protein S10 domain 251 365 IPR036838 -
Cmo04g00339 366 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 245 365 IPR001848 GO:0003735|GO:0005840|GO:0006412
Cmo04g00339 366 Pfam Glutathione S-transferase, N-terminal domain 7 77 IPR004045 -
Cmo04g00339 366 PANTHER RIBOSOMAL PROTEIN S10-RELATED 245 365 - -
Cmo04g00339 366 CDD GST_N_Tau 7 80 - -
Cmo04g00339 366 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 84 IPR004045 -
Cmo04g00339 366 ProSitePatterns Ribosomal protein S10 signature. 290 305 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cmo04g00339 366 SMART Ribosomal_S10_2 268 362 IPR027486 -
Cmo04g00339 366 CDD GST_C_Tau 84 209 IPR045074 GO:0004364|GO:0006749
Cmo04g00339 366 SFLD Glutathione Transferase (cytosolic) 4 219 IPR040079 -
Cmo04g00339 366 SFLD Main.3: Omega- and Tau-like 4 219 IPR045073 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01141 Cmo-Chr1:9375302 Cmo04g00339 Cmo-Chr4:1664939 8.46E-09 dispersed
Cmo02g01029 Cmo-Chr2:6253763 Cmo04g00339 Cmo-Chr4:1664939 1.89E-82 dispersed
Cmo04g00339 Cmo-Chr4:1664939 Cmo04g00688 Cmo-Chr4:3408834 5.72E-36 dispersed
Cmo09g00989 Cmo-Chr9:5246437 Cmo04g00339 Cmo-Chr4:1664939 3.98E-09 dispersed
Cmo04g00338 Cmo-Chr4:1659484 Cmo04g00339 Cmo-Chr4:1664939 2.19E-141 tandem
Cmo16g00189 Cmo-Chr16:844711 Cmo04g00339 Cmo-Chr4:1664939 4.10E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00339 K00799 K02969 qsu:112040052 273.478