Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g00339 | ATGGCAAGAGATCAGGACGTGCAGCTTGTGGGTTTCTGGACTAGTCCATTCGTGATGAGGCCCAGAATCGCCCTCAACATCAAATCCGTACACTACGAGTTCATTCAAGAAACATTCGGATCCAAAAGCCCGCTTCTTCTCCAATCCAACCCTGCTCTCAAGAAGATCCCTGTTCTCATTCATGCCGGCAAACCCATCGCCGAATCCTCCATCATCGTTGAGTATATCGATGATTTCTGGCCCTCCGCTCCTTACGATCGCGCCCTCGCTCGATTCTGGGGCTCCGTCGTCGACGAAAAGTTCTACGAGCCAATGAAAGCGAGTATGGGTGCAGAAGGGGAAGTGAAGAAGGGGCTTATAAATCAAGGGGTGGAAGCGATAGGGTTATTGGAGGAAGCTTTCGGGACGCTGAGCAGAGGGAAGGCGTTCTTCGGCGGAGACCATATTGGGTTTGTTGATATCGCTTTTGGGTCGTTTCTGGGGTGGATTAGAGTGGCGGAGATATCAAATGGGATGAAATTGATGGACGCAGGGAAGACGCCAGGGCTCGACGGATGGTCTCAGAGATTCTCTGCACATCACGCTGTGAAAGATCTGTTGCCCGACACTGCAAAGCTTCTGGAGTTCTCCAATGTTGTCTCAGCCAAACTGAAAGAGAATCAATTGTTTGAGGACCACGTTAGTTCAACTTCTTTCCCGCCATCCCAGATTCCTCTTCGGATAACAGGAAGAATGGCGTACGCAGCAATGAAACCAACTAAGCCAGGCTTAGAAGATACGCAAGAGCAAATCCATAAGATCAGGATTACTCTCTCCTCAAAAAATGTCAAGAACCTTGAGAAGGTTTGTGCCGACTTGGTTCGTGGTGCCAAGGACAAGAGGTTGAGGGTCAAAGGGCCAGTAAGAATGCCCACTAAGGTTCTTCACATCACAACCAGAAAATCTCCATGTGGTGAAGGTACCAACACATGGGACAGATTCGAGCTTCGTGTCCACAAGCGAGTTATCGACCTATTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCCATCACCATCGAACCTGGTGTGGAGGTTGAGGTCACCATTGCCGATCAATGA | 1101 | 49.5 | MARDQDVQLVGFWTSPFVMRPRIALNIKSVHYEFIQETFGSKSPLLLQSNPALKKIPVLIHAGKPIAESSIIVEYIDDFWPSAPYDRALARFWGSVVDEKFYEPMKASMGAEGEVKKGLINQGVEAIGLLEEAFGTLSRGKAFFGGDHIGFVDIAFGSFLGWIRVAEISNGMKLMDAGKTPGLDGWSQRFSAHHAVKDLLPDTAKLLEFSNVVSAKLKENQLFEDHVSSTSFPPSQIPLRITGRMAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIADQ | 366 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 1664939 | 1667480 | + | CmoCh04G003390.1 | Cmo04g00339 | 379314 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g00339 | 366 | Hamap | 30S ribosomal protein S10 [rpsJ]. | 264 | 363 | IPR001848 | GO:0003735|GO:0005840|GO:0006412 | |
Cmo04g00339 | 366 | TIGRFAM | uS10_euk_arch: ribosomal protein uS10 | 265 | 363 | IPR005729 | GO:0003735|GO:0006412|GO:0015935 | |
Cmo04g00339 | 366 | SUPERFAMILY | Thioredoxin-like | 6 | 84 | IPR036249 | - | |
Cmo04g00339 | 366 | Gene3D | - | 82 | 221 | - | - | |
Cmo04g00339 | 366 | SUPERFAMILY | GST C-terminal domain-like | 78 | 211 | IPR036282 | - | |
Cmo04g00339 | 366 | Pfam | Ribosomal protein S10p/S20e | 268 | 362 | IPR027486 | - | |
Cmo04g00339 | 366 | PRINTS | Ribosomal protein S10 family signature | 301 | 316 | IPR001848 | GO:0003735|GO:0005840|GO:0006412 | |
Cmo04g00339 | 366 | PRINTS | Ribosomal protein S10 family signature | 323 | 337 | IPR001848 | GO:0003735|GO:0005840|GO:0006412 | |
Cmo04g00339 | 366 | PRINTS | Ribosomal protein S10 family signature | 266 | 279 | IPR001848 | GO:0003735|GO:0005840|GO:0006412 | |
Cmo04g00339 | 366 | SUPERFAMILY | Ribosomal protein S10 | 266 | 363 | IPR036838 | - | |
Cmo04g00339 | 366 | Gene3D | Glutaredoxin | 1 | 81 | - | - | |
Cmo04g00339 | 366 | Pfam | Glutathione S-transferase, C-terminal domain | 132 | 192 | IPR004046 | - | |
Cmo04g00339 | 366 | ProSiteProfiles | Soluble glutathione S-transferase C-terminal domain profile. | 83 | 209 | IPR010987 | - | |
Cmo04g00339 | 366 | Gene3D | Ribosomal protein S10 domain | 251 | 365 | IPR036838 | - | |
Cmo04g00339 | 366 | PANTHER | 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER | 245 | 365 | IPR001848 | GO:0003735|GO:0005840|GO:0006412 | |
Cmo04g00339 | 366 | Pfam | Glutathione S-transferase, N-terminal domain | 7 | 77 | IPR004045 | - | |
Cmo04g00339 | 366 | PANTHER | RIBOSOMAL PROTEIN S10-RELATED | 245 | 365 | - | - | |
Cmo04g00339 | 366 | CDD | GST_N_Tau | 7 | 80 | - | - | |
Cmo04g00339 | 366 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 5 | 84 | IPR004045 | - | |
Cmo04g00339 | 366 | ProSitePatterns | Ribosomal protein S10 signature. | 290 | 305 | IPR018268 | GO:0003723|GO:0003735|GO:0005840|GO:0006412 | |
Cmo04g00339 | 366 | SMART | Ribosomal_S10_2 | 268 | 362 | IPR027486 | - | |
Cmo04g00339 | 366 | CDD | GST_C_Tau | 84 | 209 | IPR045074 | GO:0004364|GO:0006749 | |
Cmo04g00339 | 366 | SFLD | Glutathione Transferase (cytosolic) | 4 | 219 | IPR040079 | - | |
Cmo04g00339 | 366 | SFLD | Main.3: Omega- and Tau-like | 4 | 219 | IPR045073 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g01141 | Cmo-Chr1:9375302 | Cmo04g00339 | Cmo-Chr4:1664939 | 8.46E-09 | dispersed | |
Cmo02g01029 | Cmo-Chr2:6253763 | Cmo04g00339 | Cmo-Chr4:1664939 | 1.89E-82 | dispersed | |
Cmo04g00339 | Cmo-Chr4:1664939 | Cmo04g00688 | Cmo-Chr4:3408834 | 5.72E-36 | dispersed | |
Cmo09g00989 | Cmo-Chr9:5246437 | Cmo04g00339 | Cmo-Chr4:1664939 | 3.98E-09 | dispersed | |
Cmo04g00338 | Cmo-Chr4:1659484 | Cmo04g00339 | Cmo-Chr4:1664939 | 2.19E-141 | tandem | |
Cmo16g00189 | Cmo-Chr16:844711 | Cmo04g00339 | Cmo-Chr4:1664939 | 4.10E-84 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g00339 | K00799 | K02969 | qsu:112040052 | 273.478 |