Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00349 ATGGTCGCTCTGCAGAACTCTTGTTGTGTTCTTTTGGTTTGTGACGCATGTAAAGTGAGAGAGATCTCGCAAAGGCGTGGATACGGCGTCGTTTTGCAAGCCTTTATGATGTATGGTTTCACCGGACGGGTAATGGAAGAAGAAGAAGCCACGACGGAGGTGGTGATCGTAATTGAAACGAAAAAGAAAAGGGTTACACGTGAAACTCGGCTGATCCCACGCTGTTGTACGTCAACTGTTGAGCCATCACTCCACAAAGCAGCAGCACTGAGTTCATCAAAACCTCCAGCCATCACTCCACAAAGCAGCAGCACTGAGTTCATCAAAACCTCCTGCAGCTCCACCACTTACCCTCGTCTCTGTTTCTCATCCCTCTCACTTCACGCCGCTTCCATTCAAACAAGCCCTCGCCTTTTGGCCACCGCCGCCCTCTCTGTCTCCATCTCCTCCGTCAAGTCCGCCACCACCCAAATTCTCAAGCTCTCACACGCTCACGGCCTCTCTCCCCGAGATGTCTCTGCTCTTAATGATTGTTTGGAAGAGCTCGGTGACTCTGTCGACTCCCTCATCAGCTCCATTTCTGAGATGCCAAAGCTTCGAGGCAATGATTTTGATGTCGTTATGAGCAATATCCAGACGTGGGTCAGCGCTGCCCTCACCGATGAGACCACTTGTAGCGAGGGGTTTCAAGGGAAGGCGGTGAACAGCGGCGTTAAGGCGGTGGTGAGGTCGAAGATTGTGAACATTGCTCAGTTGACTAATGTAAGGGCAAAAACGAAAAGTAACAATAAAGAGATTTTCTGGTCGTTAAAGGACAACAGTTTGAGCATCAAATTAGAGAATGAATCAGTTTTCCTTACCTCAAACGAGAAAAAAGTGAGGAAACTTACGAGAATCGACAACCATGCGATAGGCGAAATCAGAACCATCGGTTCCAGACGGCCTTCCAGCAGCCGATTTCCTTTGATTCATCTTCTTCGTGGGCACTGGACTCCGAAAATTCGGACCTTCGACTTCCACCCACGACAGACGCTTTCCTTCTTTCCGGACCTTTTTAGCGGGGTGTTCACGAGCCAACCTGTCTCTATATCATCCCAATTTGCTGTTCTTCCCTATATAACTAAGCCTCTGAGAGCTACCTTAGCCCTCATCAATACCAACAAAGAATTGGGTCCTTCAATGGCGAGGAGTACTCTTGGGGTGTTGTTTTTAATTCACTTCTTTTTACTGTCTTCTTCAGCTTTCTCCAAGCATGTCTCTAATGGCATTCATTGGTGGTGCACAAAAACAACATACCCTGAAACCTGCAAGTATTTCTATGGCCATGCCAACAATCCTCCTCCCAAAGACATGTCTGAGTTCAAGAAAATGGCGATCAAATTCGCCATGGACGGAGCTTTGAGTGTCGAGAGGCACACTAAGAGAGTCGGTTCAAGGTGTCGAAATCATAAGGAAAGGGTTGCTTGGGCTGATTGCTTGAAGCTCTACCAAAACACCATCTTTCAGCTCGAACGCACTCTAGATTCCTCTGCTAAGTCTACTGAATTTGATATCCAAACCTGGCTTAGTACCGCCCTTACCAACGTTGAAACGTGCCGCACTGGGTTTGCTGAGCTGAATGTTGTGGACAATGTATTGCCGCTGATCACGTCAAACAATGTCACACAGCTGATAAGCAACAGCTTGGCGGTTAACAATGCTTCAACTTGGCAGGGGAAAGAGACGTATAAACAGGGCTTTCCAAGTTGGCTTTCAGGTGGTGATAGGAAGCTGCTGCAGTCATCTTCAATGATGGTGGACCTTGTGGTGGCTCAGGATGGATCCGGTGACCATAAGACAGTTGCAGCTGCACTAGAGGAAGCTGCAAAAAGGAGGACAGATGGGAGATTCGTTATACAAGTAAAGAGAGGGGTTTATGAAGAAAACCTCGAGATAGGAAATAAGATGAAGAATATAATGCTAGTCGGAGATGGAATGAGATTTACCTTCATTACAGGATTTATAGCTCAAGGCATCACATTCCGAAACACGGCCGGTCCCGAAAACCATCAAGCAGTTGCTCTCCGGTCCGGTGCAGATCGTTCCGTCTTCTACCGCTGTGCCTTTGAAGGGTATCAGGACACCCTCTATGTCCATTCACAAAGACAATTCTATAAAGAGTGTTATATTTACGGGACTGTAGATTTCATATTCGGAAATGCTGCAGTGGTTCTACAGAACTGCATGATTTACGCAAGGAAACCAATGAATGGTCAAAAGAATGCAGTTACTGCTCAAGGAAGGACTGATCCAAATCAAAATACAGGCATTTCAATCCATAACTCACGGGTCATGGCCACAGATGACCTGAAACAAGTGGAGAGCACAGTGAAAACCTTCTTGGGAAGGCCGTGGAAGGAGTACTCTCGAACAGTTTTCATTAAAACTTACCTCGATACTTTGGTTGATCCAGCAGGTTGGTTGGAATGGAATGGTGATTTTGCATTGAATACTTTATACTATGGAGAGTATAAGAACATTGGCCCTCGTTCATCAACAGACCAGAGAGTGCAGTGGAAAGGTTACCATGTTATAAGCAATTCAACAGAGGCATCGGAGTTCTCTGTCCAAAATTTCATTTCAGGGCAGTCATGGCTGCCAGGCACAGAGGTCCCATTCATTCCTGGAATCTAG 2673 46.61 MVALQNSCCVLLVCDACKVREISQRRGYGVVLQAFMMYGFTGRVMEEEEATTEVVIVIETKKKRVTRETRLIPRCCTSTVEPSLHKAAALSSSKPPAITPQSSSTEFIKTSCSSTTYPRLCFSSLSLHAASIQTSPRLLATAALSVSISSVKSATTQILKLSHAHGLSPRDVSALNDCLEELGDSVDSLISSISEMPKLRGNDFDVVMSNIQTWVSAALTDETTCSEGFQGKAVNSGVKAVVRSKIVNIAQLTNVRAKTKSNNKEIFWSLKDNSLSIKLENESVFLTSNEKKVRKLTRIDNHAIGEIRTIGSRRPSSSRFPLIHLLRGHWTPKIRTFDFHPRQTLSFFPDLFSGVFTSQPVSISSQFAVLPYITKPLRATLALINTNKELGPSMARSTLGVLFLIHFFLLSSSAFSKHVSNGIHWWCTKTTYPETCKYFYGHANNPPPKDMSEFKKMAIKFAMDGALSVERHTKRVGSRCRNHKERVAWADCLKLYQNTIFQLERTLDSSAKSTEFDIQTWLSTALTNVETCRTGFAELNVVDNVLPLITSNNVTQLISNSLAVNNASTWQGKETYKQGFPSWLSGGDRKLLQSSSMMVDLVVAQDGSGDHKTVAAALEEAAKRRTDGRFVIQVKRGVYEENLEIGNKMKNIMLVGDGMRFTFITGFIAQGITFRNTAGPENHQAVALRSGADRSVFYRCAFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNAAVVLQNCMIYARKPMNGQKNAVTAQGRTDPNQNTGISIHNSRVMATDDLKQVESTVKTFLGRPWKEYSRTVFIKTYLDTLVDPAGWLEWNGDFALNTLYYGEYKNIGPRSSTDQRVQWKGYHVISNSTEASEFSVQNFISGQSWLPGTEVPFIPGI 890
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1702527 1711912 + CmoCh04G003490.1 Cmo04g00349 379324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00349 890 Pfam Plant invertase/pectin methylesterase inhibitor 107 255 IPR006501 GO:0004857
Cmo04g00349 890 Pfam Plant invertase/pectin methylesterase inhibitor 423 563 IPR006501 GO:0004857
Cmo04g00349 890 PANTHER PECTINESTERASE 401 666 - -
Cmo04g00349 890 PANTHER PECTINESTERASE 401 666 - -
Cmo04g00349 890 SUPERFAMILY Pectin lyase-like 600 889 IPR011050 -
Cmo04g00349 890 PANTHER PECTINESTERASE 101 252 - -
Cmo04g00349 890 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 106 255 IPR035513 -
Cmo04g00349 890 PANTHER PECTINESTERASE 666 889 - -
Cmo04g00349 890 Gene3D - 594 890 IPR012334 -
Cmo04g00349 890 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 421 566 IPR035513 -
Cmo04g00349 890 SMART PMEI_2 418 564 IPR006501 GO:0004857
Cmo04g00349 890 SMART PMEI_2 103 258 IPR006501 GO:0004857
Cmo04g00349 890 CDD PMEI-like_3 110 253 - -
Cmo04g00349 890 Gene3D Invertase/pectin methylesterase inhibitor family protein 419 567 IPR035513 -
Cmo04g00349 890 Gene3D Invertase/pectin methylesterase inhibitor family protein 102 259 IPR035513 -
Cmo04g00349 890 CDD PMEI-like_3 425 567 - -
Cmo04g00349 890 Pfam Pectinesterase 665 875 IPR000070 GO:0030599|GO:0042545
Cmo04g00349 890 ProSitePatterns Pectinesterase signature 2. 723 732 IPR033131 -
Cmo04g00349 890 PANTHER PECTINESTERASE 666 889 - -
Cmo04g00349 890 PANTHER PECTINESTERASE 101 252 - -
Cmo04g00349 890 TIGRFAM PME_inhib: pectinesterase inhibitor domain 99 255 IPR006501 GO:0004857
Cmo04g00349 890 TIGRFAM PME_inhib: pectinesterase inhibitor domain 397 566 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00349 Cmo-Chr4:1702527 Cmo14g02028 Cmo-Chr14:14842482 2.50E-175 dispersed
Cmo16g00195 Cmo-Chr16:868765 Cmo04g00349 Cmo-Chr4:1702527 1.07E-85 dispersed
Cmo16g01099 Cmo-Chr16:7753107 Cmo04g00349 Cmo-Chr4:1702527 4.67E-36 dispersed
Cmo04g00347 Cmo-Chr4:1699344 Cmo04g00349 Cmo-Chr4:1702527 3.39E-07 proximal
Cmo02g00998 Cmo-Chr2:6110312 Cmo04g00349 Cmo-Chr4:1702527 2.26E-07 transposed
Cmo16g00926 Cmo-Chr16:5729887 Cmo04g00349 Cmo-Chr4:1702527 0 transposed
Cmo20g01074 Cmo-Chr20:9934282 Cmo04g00349 Cmo-Chr4:1702527 3.16E-98 transposed
Cmo16g00198 Cmo-Chr16:874726 Cmo04g00349 Cmo-Chr4:1702527 1.97E-22 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00349 K01051 - csv:101211449 840.876