Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00367 ATGGCTGATTCCAGGGATCTTCCTCCTCGCCGCGGAGCAGGAATAGTCAAAAGTATACGCTTGGAGAACTTCATGTGTCACAGCAACTTGTATATTGAGTTTGGCGAGTGGCTCAATTTCATTACAGGGCAGAACGGAAGTGGTAAGAGTGCTATACTGACTGCTTTATGTGTTGCATTCGGCTGTCGAGCTAGAGGCACCCAAAGGGCGTCGACGTTGAAGGATTTTATTAAAACTGGTTGCAGTCATGCTGTCATCCAAGTTGAAATGGAAAATTCTGGGGAGGATGCTTTTAAGCCTGGAATATATGGTAATGTTATAATCATAGAGAGAAGGATTTCCGAAGCCTCAGGTGCCATTGTTTTGAAAGATTCTCAAGGAAAGAAGGTTTCCAGTCGGAGGGATGAACTACGAGAGCTTGTAGACCATTTTAATATAGATGTTGAGAACCCGTGTGTGATAATGAGTCAGGACAAAAGTAGAGAGTTCCTGCATTCTGGGAATGACAAAGACAAATTCAAGTTCTTCTTCAAAGCTACTCTTCTCCAGCAAGTTGATGATCTGTTGAAAAACATTTTTCATCAACTGAGATCTGCGAATGCACTTGTTGATGACTTGGAGTCTACCATACGACCTGTGGAGAAGGAGCTAAATGAGCTGCAAGGAAAAATTAAAAACATGGAGCACGTAGAAGAAATCTATCAACAAGTCCAACAGTTAAAGAAGAAGCTTGCGTGGTCATGGGTATATGATGTAGACAAGCAGCTTCTGGACCAAAGTGTAAAAATAGGAAAGCTCAAAGATCGCATCCCTATTTGTCGAGCAAAAATTGATCATCAACAGGGTCTGGCAGAAAAATTAAGAGAACGCTTTATCGAGAAGAAGGCTCAAATTGCAAGCATGATGGAGAAAACTTCGGAAGTTAGAAGACTGAAGGACGAATTGCAAGAAACCCTTTCCTTGGCAACAAGAGAGAAGCTCGGGCTTGAAGAGGAGCATGGCCGCAAAATGAACTACATTCAAAAGATGGCGAAACGTGTTAGGCTGCTTGAGCAACAAGTTCACGATGTTCATGAGCAGCACATAAGAAATACACAGGCTGAAGAATCTGAAATTGAGGAAAAGTTGAAGGAACTCGAATTGGAGACTGAAGCTGCTAAGTCAACAGTCATGAGGTTAAAGGAGGAGGAAAATGGCTTACTGGATAGTCTAAACAGTGGGAGAAGTGAAATAAAAAAGATTGCTGAAGAGATTGAAGGTTATGAAAAAAAGCATAATGAATTTTCACGCTCTATTCGAGAGCTAAGGCAGCATCAAACAAACAAGGTTACAGCTTTTGGAGGTGATAGAGTCATTCAATTATTACGTGTGATTGAGAGGCAAAATCGAAGATTCAAGAAACCTCCCATTGGTCCAATTGGTGCCCATCTGAATTTGGTCAATGGTGACGTGTGGGCTCCTGCTGTTGAAAATGCCATTGGGAGGTTGCTCAATGCATTCATCGTGACCAATCATCAAGATTCTCTTCTTTTGAGAGGATGTGCTAATGAAGCCAATTATAGGCAACTCCCAATTATCATCTATGACTTTTCAAGACCACTGTTAGATATTCCAGCTCACATGCTTCCTCAAACAAAGCACCCTACAACCCTTTCAGTGATTCATTCTGAAAACCATACTGTCATCAATGTTTTGATAGATAAGGGTGATGCTGAGAGGCAAGTGCTTGTTAAAGATTATGATGTGGGTAAATCAGTCACGTTTGACCAACGGATCAAAAATCTCAAGGAGGTCTTTACGTTAGATGGATATAAAATGTTTTCTCGTGGTTCTGTTCAGACAATTCTTCCCCCAGTTAAAAGACCTAGAAGTGGCAGACTTTGTAGTTCTTTTGATGACCAGATTAAAAGTCTTGAAAAAGATACATCAAACATGAAGGAAGAAGCTGAGCAATGTAGGAAGAGGAAGAGAGCTGCAGAAGAACAACTTCGGGGTCTTGAAGAGAACCTATGCAATGCCAAGCGGAGATGTCAAAATGCGGAACGCATTTTAATGTCCAAAAATTTGGAGCTACAAGATTTACGGAAGTCACAGGTTGCTGGAACTAGTTCATTACCTTCATCAAACGTTGACGAGCTTCATCAAGAAATTTCTAAAATCAAAGAGGAGATGGAAGAGAATAAATCGCTTCTGGAAAAGTTCAGAGTGAGAATGAAGGATGCGGAAGCCAAGGCAAAAGATCTTAAACTATCATTTGAGAATCTGTGTGAGTCAGCGAAAGGAGAAGTTGATGCATATGAAGAAGCCGAGAGAGATATGTTGCAGATTGAACGAGATCTGCATTCTGCCGAAAAGGAGATGAATCATTATGAAGGTATTATGACTAACAAGGTCCTGTTTGATATCAAAGAGGCAGAGAGACAATATGAGGAGCTCGAGCGCCATCGTAAGGAGAGTTACAGTAAGGCTTCAATAATATCTCCTGAGAGTGAAATTGAGGCTTTAGGTGATTGGGATGGGAGCACACCTGAACAACTCAGTGCACAATTAAACAGGCTAAATCAGAGACTTAGTAACGAGACCCGACAATGTTCTGAATCTCTGGAAGACTTGAGGATGATGTATGAGAAAAAGGAGCGTACAATTATAAGAAAACAACAGACTTACAAAAGTTTTAGAGAGAAGTTGAATGCTTGCCAGAAAGCTCTTGAGCTACGGTGGAACAAGTTTGAAAGGAATGCTAATCTTTTGAAGCGTCAATTGACTTGGCAATTTAATGGCCATTTAAGAAAAAAAGGGATCAGTGGACATATAAAAATCAATTACGAGGAAAAGACCCTCTCGGTTGAGGTGAAGATGCCCCAAGATGCATCCAGCAGTTCTGTTCGTGATACCCGTGGACTTTCAGGTGGAGAACGGTCATTTTCCACTCTATGCTTCACTTTGGCATTACACGAAATGACAGAAGCCCCATTTCGAGCAATGGATGAGTTTGATGTGTTTATGGATGCAGTAAGTCGGAAAATTAGCTTAGACACTCTTGTGGATTTTGCATTGTCACAAGGTTCCCAATGGATATTTATCACACCTCATGATATCGGCGTGGTAAAACAAGGAGAACGAATCAAGAAGCAGCAAATGGCAGCTCCTCGATCATGA 3159 41.25 MADSRDLPPRRGAGIVKSIRLENFMCHSNLYIEFGEWLNFITGQNGSGKSAILTALCVAFGCRARGTQRASTLKDFIKTGCSHAVIQVEMENSGEDAFKPGIYGNVIIIERRISEASGAIVLKDSQGKKVSSRRDELRELVDHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVDDLLKNIFHQLRSANALVDDLESTIRPVEKELNELQGKIKNMEHVEEIYQQVQQLKKKLAWSWVYDVDKQLLDQSVKIGKLKDRIPICRAKIDHQQGLAEKLRERFIEKKAQIASMMEKTSEVRRLKDELQETLSLATREKLGLEEEHGRKMNYIQKMAKRVRLLEQQVHDVHEQHIRNTQAEESEIEEKLKELELETEAAKSTVMRLKEEENGLLDSLNSGRSEIKKIAEEIEGYEKKHNEFSRSIRELRQHQTNKVTAFGGDRVIQLLRVIERQNRRFKKPPIGPIGAHLNLVNGDVWAPAVENAIGRLLNAFIVTNHQDSLLLRGCANEANYRQLPIIIYDFSRPLLDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVTFDQRIKNLKEVFTLDGYKMFSRGSVQTILPPVKRPRSGRLCSSFDDQIKSLEKDTSNMKEEAEQCRKRKRAAEEQLRGLEENLCNAKRRCQNAERILMSKNLELQDLRKSQVAGTSSLPSSNVDELHQEISKIKEEMEENKSLLEKFRVRMKDAEAKAKDLKLSFENLCESAKGEVDAYEEAERDMLQIERDLHSAEKEMNHYEGIMTNKVLFDIKEAERQYEELERHRKESYSKASIISPESEIEALGDWDGSTPEQLSAQLNRLNQRLSNETRQCSESLEDLRMMYEKKERTIIRKQQTYKSFREKLNACQKALELRWNKFERNANLLKRQLTWQFNGHLRKKGISGHIKINYEEKTLSVEVKMPQDASSSSVRDTRGLSGGERSFSTLCFTLALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALSQGSQWIFITPHDIGVVKQGERIKKQQMAAPRS 1052
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1774556 1786847 - CmoCh04G003670.1 Cmo04g00367 379342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00367 1052 Coils Coil 710 758 - -
Cmo04g00367 1052 Coils Coil 284 332 - -
Cmo04g00367 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 1043 IPR027417 -
Cmo04g00367 1052 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 10 1052 - -
Cmo04g00367 1052 Gene3D - 15 262 IPR027417 -
Cmo04g00367 1052 Coils Coil 404 438 - -
Cmo04g00367 1052 Coils Coil 795 822 - -
Cmo04g00367 1052 Gene3D - 798 1048 IPR027417 -
Cmo04g00367 1052 Coils Coil 766 793 - -
Cmo04g00367 1052 Coils Coil 203 230 - -
Cmo04g00367 1052 Pfam RecF/RecN/SMC N terminal domain 16 1042 IPR003395 -
Cmo04g00367 1052 CDD ABC_SMC6_euk 930 1052 - -
Cmo04g00367 1052 Coils Coil 362 396 - -
Cmo04g00367 1052 Coils Coil 635 697 - -
Cmo04g00367 1052 Coils Coil 340 360 - -
Cmo04g00367 1052 Coils Coil 850 888 - -
Cmo04g00367 1052 CDD ABC_SMC6_euk 16 168 - -
Cmo04g00367 1052 Gene3D - 628 797 - -
Cmo04g00367 1052 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 10 1052 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00367 Cmo-Chr4:1774556 Cmo17g00945 Cmo-Chr17:8374616 4.82E-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00367 K22804 - csv:101208493 1825.06