Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00368 ATGAAAACAGCTTCCAGTTTCCTGTTTTTGATCTCTGCTGTTCTTTTGATCATCATCTCTTTTCTTCTTTCTGCAACTTCTTCAACTCCAACTGTTTTGCCCCTTCAACTTCTCTCTCTGCTTTCTATCAAATCCTCCATTAAAGACTCCTCTTCGAGCTTTCTTGATTGGGACCCTAAACCCACCTTCTCCAAAGCTGATTTTCATGACCCGATTTGGTGTTCTTGGTCGGGAGTTCGATGTGATCAGAACTCGCCGGAAATTACCTCCTTGGATTTGTCTCGTCGGAATCTCACTGGGTTTATTCCCTCTGAAATTAAGTACTTAACGAGCTTAGTTTATTTGAATTTGAGTGGTAATAGCTTTCTTGGGCCGTTCCCCACCGCCATTTTTGAGCTATCTCAGCTTACGACTCTTGATATTAGTCATAATATCTTCACCTCCACTTTCCCACCTGGGATTTCCAAGCTTAAGTTCTTGAATGTTTTCGATGCCTACAGTAACAACTTCACTGGTCCGTTACCGCCAGAATTCGCACATCTCCGGTTCCTTGAATGGCTCAACCTCGGTGGAAGCTACTTTAATGGCAGTATTCCGGCGAGTTATGGCGGTTTGTCACGGTTGAAGTATTTGCATTTGGCTGGAAATGCTCTTGATGGTCAAATTCCAGGGCAACTAGCGTATTTAACCAAACTCGAGAGAATGGAAATCGGTTACAATACCTTCTCCGGTGGGATTCCGGCGGAATTTCCATTGTTGTTGAATCTGAAATACTTGGATATTGCCGGAGCGAATCTCGCCGGGACTCTGCCGCAGGACATTGGAAACATGACGAAGCTGCAAAATCTGCTTCTCTTCAAGAATCGAATCACCGGCGAAATTCCTGAAAGTTTAGGGAAATTAGAAGCGCTCGAGGAGCTTGATTTGTCGGAGAATCAACTCACCGGAACGATTCCGTCGGATTTGTATAATCTGAAGGAATTAAGAGAGCTGAGTTTGATGGCGAACGATCTGAGTGGGGAAATTCCACAAGCACTTGGCGATCTTCCAAATCTCGCCAGTTTGCGATTATGGAACAATTTGCTCACAGGTCCACTGCCTCAGAATCTCGGCTCGAACGAGAAGTTACTGCAAGTCGACGTGTCGTCGAATCAACTCTCCGGTCCGATTCCTCCAAATCTCTGCCATGGAAACAAGCTGTATAAGCTCATTCTGTTTTCCAACAAATTAGGGCACGAACTTCCCGCCTCTTTAACGAACTGCACGTCTCTCGTTCGTCTTCGAATCCAAAACAACTTCCTTAACGGCTCGATTCCCCACGGTTTCGGCATGTTGGAGAATCTGACATTCGCCGATTTCAGTAACAATAACTTCTCCGGCGAGATTCCGGCGGATTTTGGTAATGCGGTGAAGTTACAGTACTTGAACATTTCACAGAACGCCTTCGGAACTTCCTTACCGGAGAATATCTGGAACTCGACTAGCTTACAGATCTTCTCGGCGAGTTCTTCGAGAATCATCGGTAGCATCCCCGATTTCGTCGGGTGTAGATCTATCTACGAGATCGAACTCCAGGACAATAATTTAAACGGTAGTATTCCATGGACGTTCGGCCATTGCGAGAAGCTACTCACGCTGAATTTAAGCCGGAATTCGTTAACCGGCATTATTCCATGGGAGATTTCCACGCTGCCGTCGATTACCGCCATTGATCTGTCACGAAACTTCCTCACAGGTACAATCCCTTCAAATTTTCAAAACTGTAGCACAATCGAAAGCTTCGACGTATCGTACAACCAGCTCACCGGCCCCATTCCATCGACCGGAACAATCTTCCCGGGATTACACTCTTCTTCATTCATCGGCAACGACGGTCTCTGCGGCGAGATTCTAGCGAAACCCTGCGCCGTCGACGCTCTCTCCGATGGCGGGATAGAGGTCCGACAGCAGCAGCCACGGCGGACGACGGGAGCAATCGTGTGGATAATGGCAGCGGCGTTTGGTATCGGACTGTTCGTATTAGTAGCCGGGACGAGGTGTTTTCAGACGCATTACAGCCGTCGATTCGGCGGTGGCGACGAGGAAACGGGACCGTGGAAACTAACCGCCTTTCAACGGTTGAACTTCACGGCGGAGGACGTGTTAGAGTGTATGTCAATGACGGATAAGATCCTGGGAATGGGGTCCACTGGGACGGTATATAAAGCGGAGATGCCAGGTGGCGAAATCATAGCGGTGAAGAAATTGTGGGGTAAATATAAAGAGAACATCCGACGGCGGAGAGGGGTTTTGGCGGAAGTGGAGGTACTGGGGAACGTGAGGCACAGGAACATAGTGAGATTGTTAGGGTGCTGCAGCAACAAGGAGTGTACGATGCTGCTCTACGAGTATATGCCAAATGGTAATTTGGACGATTTACTGCACGGTAAAAACAAGGGTGAAAATTTGGTGGCCGATTGGATAACTAGGTATAAAATTGCACTGGGTGTGGCACAGGGGATTTGTTATCTTCACCATGACTGTGATCCAGTCATCGTGCACCGCGATTTGAAGCCCAGTAATATTTTATTGGACGGTGAGATGGAGGCCAGAGTGGCGGATTTTGGCGTCGCTAAGTTGATCCAGACCGATGAGTCAATGTCGGTGATCGCTGGATCCTACGGCTACATTGCACCAGAATATGGCTACACGCTTCAAGTGGATGAAAAAAGTGATATTTATAGCTTTGGAGTTGTGTTGATGGAGATCGTGAGCGGGAAGAGGTCGGTGGATTCTGAATTTGGCGAGGGGAACAGCATTGTGGATTGGGTAAGATCCAAAATTAAGGTGAAAGATGGAGTGAATCAAGTTTTGGACAACGATGTCAGTGCGTCTTGTGCGTCTGTTAGAGAAGAAATGATACAAATGCTTCGTATTTCATTGCTTTGTACGAGCCGTAACCCTGCAGACCGACCGTCGATGCGTGACGTCGTTTTGATGCTACAACAAGCAAAACCCAAGAGAAAATTTCCTGGGAATCTTGTCACTGTTGAAGCTGATGTTCTCTTAGACCACAAGATAGTAGCCGAGTGTTAA 3075 47.22 MKTASSFLFLISAVLLIIISFLLSATSSTPTVLPLQLLSLLSIKSSIKDSSSSFLDWDPKPTFSKADFHDPIWCSWSGVRCDQNSPEITSLDLSRRNLTGFIPSEIKYLTSLVYLNLSGNSFLGPFPTAIFELSQLTTLDISHNIFTSTFPPGISKLKFLNVFDAYSNNFTGPLPPEFAHLRFLEWLNLGGSYFNGSIPASYGGLSRLKYLHLAGNALDGQIPGQLAYLTKLERMEIGYNTFSGGIPAEFPLLLNLKYLDIAGANLAGTLPQDIGNMTKLQNLLLFKNRITGEIPESLGKLEALEELDLSENQLTGTIPSDLYNLKELRELSLMANDLSGEIPQALGDLPNLASLRLWNNLLTGPLPQNLGSNEKLLQVDVSSNQLSGPIPPNLCHGNKLYKLILFSNKLGHELPASLTNCTSLVRLRIQNNFLNGSIPHGFGMLENLTFADFSNNNFSGEIPADFGNAVKLQYLNISQNAFGTSLPENIWNSTSLQIFSASSSRIIGSIPDFVGCRSIYEIELQDNNLNGSIPWTFGHCEKLLTLNLSRNSLTGIIPWEISTLPSITAIDLSRNFLTGTIPSNFQNCSTIESFDVSYNQLTGPIPSTGTIFPGLHSSSFIGNDGLCGEILAKPCAVDALSDGGIEVRQQQPRRTTGAIVWIMAAAFGIGLFVLVAGTRCFQTHYSRRFGGGDEETGPWKLTAFQRLNFTAEDVLECMSMTDKILGMGSTGTVYKAEMPGGEIIAVKKLWGKYKENIRRRRGVLAEVEVLGNVRHRNIVRLLGCCSNKECTMLLYEYMPNGNLDDLLHGKNKGENLVADWITRYKIALGVAQGICYLHHDCDPVIVHRDLKPSNILLDGEMEARVADFGVAKLIQTDESMSVIAGSYGYIAPEYGYTLQVDEKSDIYSFGVVLMEIVSGKRSVDSEFGEGNSIVDWVRSKIKVKDGVNQVLDNDVSASCASVREEMIQMLRISLLCTSRNPADRPSMRDVVLMLQQAKPKRKFPGNLVTVEADVLLDHKIVAEC 1024
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1787381 1791478 - CmoCh04G003680.1 Cmo04g00368 379343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00368 1024 ProSiteProfiles Protein kinase domain profile. 719 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00368 1024 SUPERFAMILY Protein kinase-like (PK-like) 722 994 IPR011009 -
Cmo04g00368 1024 SMART LRR_typ_2 564 587 IPR003591 -
Cmo04g00368 1024 SMART LRR_typ_2 349 373 IPR003591 -
Cmo04g00368 1024 SMART LRR_typ_2 301 325 IPR003591 -
Cmo04g00368 1024 SMART LRR_typ_2 205 229 IPR003591 -
Cmo04g00368 1024 SMART LRR_typ_2 133 157 IPR003591 -
Cmo04g00368 1024 SMART LRR_typ_2 470 493 IPR003591 -
Cmo04g00368 1024 ProSitePatterns Protein kinases ATP-binding region signature. 725 748 IPR017441 GO:0005524
Cmo04g00368 1024 Pfam Leucine rich repeat N-terminal domain 36 82 IPR013210 -
Cmo04g00368 1024 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE TDR ISOFORM X3 6 1016 - -
Cmo04g00368 1024 Gene3D Ribonuclease Inhibitor 395 635 IPR032675 -
Cmo04g00368 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 845 857 IPR008271 GO:0004672|GO:0006468
Cmo04g00368 1024 SUPERFAMILY L domain-like 65 409 - -
Cmo04g00368 1024 Gene3D Transferase(Phosphotransferase) domain 1 798 1010 - -
Cmo04g00368 1024 Gene3D Ribonuclease Inhibitor 37 202 IPR032675 -
Cmo04g00368 1024 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 1016 - -
Cmo04g00368 1024 Gene3D Ribonuclease Inhibitor 205 394 IPR032675 -
Cmo04g00368 1024 Pfam Protein kinase domain 722 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00368 1024 Pfam Leucine rich repeat 518 575 IPR001611 GO:0005515
Cmo04g00368 1024 Pfam Leucine rich repeat 86 144 IPR001611 GO:0005515
Cmo04g00368 1024 Pfam Leucine rich repeat 279 338 IPR001611 GO:0005515
Cmo04g00368 1024 Gene3D Phosphorylase Kinase; domain 1 698 797 - -
Cmo04g00368 1024 SMART serkin_6 719 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00368 1024 SUPERFAMILY L domain-like 318 627 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00368 Cmo-Chr4:1787381 Cmo04g00967 Cmo-Chr4:4920178 0 dispersed
Cmo05g01278 Cmo-Chr5:9916542 Cmo04g00368 Cmo-Chr4:1787381 0 dispersed
Cmo02g01759 Cmo-Chr2:10066921 Cmo04g00368 Cmo-Chr4:1787381 0 transposed
Cmo16g00218 Cmo-Chr16:963327 Cmo04g00368 Cmo-Chr4:1787381 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74231 PF00069 Pkinase 1.30E-46 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00368 - - csv:101215776 1711.04